Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421927.1:5231477-5233747[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0043 7.3 8.0 1.3 18 43 5 27 3 28 0.92

2 16 0.0016 2.6 9.4 0.0 18 43 64 86 62 87 0.93

3 16 0.0003 0.5 11.7 0.5 17 43 94 117 91 118 0.91

4 16 0.0017 2.9 9.3 0.4 18 43 125 147 121 148 0.88

5 16 0.00053 0.89 10.9 2.1 15 43 152 177 149 178 0.89

6 16 0.0075 13 7.2 1.1 17 44 183 207 179 207 0.89

7 16 0.068 1.1e+02 4.2 0.0 4 43 226 260 223 261 0.77

8 16 0.0075 13 7.2 0.5 11 43 280 309 265 310 0.92

9 16 0.014 23 6.4 0.0 15 44 343 369 339 369 0.85

10 16 0.63 1.1e+03 1.1 5.1 18 43 391 413 384 414 0.90

11 16 1.5 2.5e+03 -0.1 8.7 6 29 408 431 405 443 0.71

12 16 0.0012 2 9.8 3.1 12 43 443 471 434 472 0.78

13 16 0.069 1.1e+02 4.2 0.8 17 44 477 501 473 501 0.85

14 16 1.2 1.9e+03 0.2 0.2 19 43 539 560 534 561 0.73

15 16 1.7 2.9e+03 -0.3 0.7 12 28 562 578 558 586 0.81

16 16 0.00059 0.99 10.8 2.4 19 44 603 625 588 625 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0043	7.3	8.0	1.3	18	43	5	27	3	28	0.92
2	16	0.0016	2.6	9.4	0.0	18	43	64	86	62	87	0.93
3	16	0.0003	0.5	11.7	0.5	17	43	94	117	91	118	0.91
4	16	0.0017	2.9	9.3	0.4	18	43	125	147	121	148	0.88
5	16	0.00053	0.89	10.9	2.1	15	43	152	177	149	178	0.89
6	16	0.0075	13	7.2	1.1	17	44	183	207	179	207	0.89
7	16	0.068	1.1e+02	4.2	0.0	4	43	226	260	223	261	0.77
8	16	0.0075	13	7.2	0.5	11	43	280	309	265	310	0.92
9	16	0.014	23	6.4	0.0	15	44	343	369	339	369	0.85
10	16	0.63	1.1e+03	1.1	5.1	18	43	391	413	384	414	0.90
11	16	1.5	2.5e+03	-0.1	8.7	6	29	408	431	405	443	0.71
12	16	0.0012	2	9.8	3.1	12	43	443	471	434	472	0.78
13	16	0.069	1.1e+02	4.2	0.8	17	44	477	501	473	501	0.85
14	16	1.2	1.9e+03	0.2	0.2	19	43	539	560	534	561	0.73
15	16	1.7	2.9e+03	-0.3	0.7	12	28	562	578	558	586	0.81
16	16	0.00059	0.99	10.8	2.4	19	44	603	625	588	625	0.86

Sequence Information

Coding Sequence: ATGCCAGAATACGTCTGTGATTACTGCACCCGAACTTTCACCAGAAAATACAACCTTGAAACGCATATAGAAAACTGCCATGTCAACTCAACATGCTACTGCGAGATATGTGACACGAGATTTGGGAGCCCAGCAGGTCTGCAACTCCACTTTAGCCGAGGACATAACCGGTTCATGCAACCATACCCAGAATGTGACATATGCGGACGAATTTTCACTAGAAAACAGAATGTCGTATCACACATGGTCACTGTTCATCTGCAAGGCATTGGGCCTCAAATACAATGCCGCACATGTGGTAAGACTTTTACTACAGAAAGGAACTTAAGGAGACATGTAAACCAACTACATAACCCTGATGTGAAATACCCAACTTGTGATTATTGTAAAAAAGTATTCAAAGGCAAGCATTCTCTCTTAGCTCATATCCAAGCCACACATAATGTTTTAAAAGGAATTATCAAATGCCATCTATGTGATAAAGTTTATACTAATAACCGAAATTTAAAGCGACATATAGAAATGTATCACGGTGAAAAGGGTGAGTTTAGATGCACACTCTGTCCTAAAGTTTACACATCGAATCAGAGTTTGCGTAGACACACTAGAACCAGACATAATTCCGACCAAGAATATAGAACAGACTCAGTTACTATAGATGATTCTATAGATTATTATAACTATGATTTCAAATTGCAATTACAAGAATTTAATTGCGAATATTGCGAGGAATTCTTCAATGATGAACCAACATTACGCGCGCATGTGAAATCCGATCATACGTTCAAAAATTTCTATGAGTACTGCAGAAATTCGCTGCTTAAACAAATGGGAACGAGCGAGAAAGAAAACTTTTATAATTGCGAGACTTGTAACAGCACTTTTAACTCTGTCTACGAATTAAAAGATCACATGAGGACCAGTCATGATAGAGAGTATTCACTCTCAACCTGTAATGTCTGCTTCTTAAAGTTTTACAGCAAAGAAACTATGTTTGAACATAAAAAGATATGCCTGCCACCGCCTAACGTCAACAACTGTAACTACTGCGACAAACTATTTACAGATATCTCAAGTCTAGAGTTTCATATTAGGATTTTCCATCCTCAAGCTAAAATAGCTGATAATGATGTTTCTTCGACTAATCCAGAAGATATTGAGGCAGGATTTAAATGTCCCCACTGCAATAGGATGTACTACAGCGATCGGTCTTTGAAACACCATATGAAACTCAAGCATACTACAGACGAAGCAGTTGATTGTGGTTTATGCGGCAAAATCTGTAGCAACAAGTATTATCTTGCATCACACATCAAAATTGTTCATAATAACGATTCCTGGTCCAAATGCGACTATTGCGAGAAGCAATTCAAATCTAAAAGGAACATCCGACGTCACATAGAATACACGCATTTAGGTATGCAGCGGTACAAATGTATTGAATGTGAGACGCTATTTAAAGAGAAAAGGAGTCTTAGAAAACATGTGCGGACTAAGCATCCCAACTCAACTGTGTTCCCGCAGTGTCATATATGTTACAAGCGATTCGAATCAGCTAAATCATGCAAGATACATCTAAAACTAATCCACTCGTTTAACATGAATACGTACCCTTGTGACCTGTGTTCGGTATCGTTCAGTTCAAATGAAGCTCTATCTATCCACCTCCAAACTAAGCATCTGGCTAAGGATCAAATTTTTAAATGCGAGACTTGTAACCTCGTCTTCAATGGGCAGGACAAATTTGAACATCACAACGAACTATACCACGTGTCTTTACCAATAAAACAGAAGCTGCTTCCCTGTTGCATTCTATGCATGAAGGATTTCAGTACACGGAAAACTTTGAAGCGCCATATCAAGAAATTCCATCAAGATTTCGATCCTGAAGAATTAGCTACATACGGTTCTAAGAGACGTATGTTTAATATAGACTGCGAGGAATGTATACAGAATTTCAACAACGATTTTTACTTAGATATATATCAAAAACTCAAACATTTAAAAGACTCGATTGTTTTTAAATGCGAAAGTTGTTCTTCGTCTTATAACTGCCTGGAATATTCAATACAGAGGCATAAGTTGGCCAATTTAGAGCCATGTAAGAGTAAGATGGTTTTGAGTGAGTTGTGTACAGCAGAGATGAGTGATGAGGCGTCGAATGGTTGGGTAGAGTCGGTGGAAGCGGAAAGTACTACAGGAGATTTGCAAGTGAAGGAAGAGCCTATGGATGTAGACGATATAGTGAAGACTGAGCCTATGTCGCCATGA
Protein Sequence: MPEYVCDYCTRTFTRKYNLETHIENCHVNSTCYCEICDTRFGSPAGLQLHFSRGHNRFMQPYPECDICGRIFTRKQNVVSHMVTVHLQGIGPQIQCRTCGKTFTTERNLRRHVNQLHNPDVKYPTCDYCKKVFKGKHSLLAHIQATHNVLKGIIKCHLCDKVYTNNRNLKRHIEMYHGEKGEFRCTLCPKVYTSNQSLRRHTRTRHNSDQEYRTDSVTIDDSIDYYNYDFKLQLQEFNCEYCEEFFNDEPTLRAHVKSDHTFKNFYEYCRNSLLKQMGTSEKENFYNCETCNSTFNSVYELKDHMRTSHDREYSLSTCNVCFLKFYSKETMFEHKKICLPPPNVNNCNYCDKLFTDISSLEFHIRIFHPQAKIADNDVSSTNPEDIEAGFKCPHCNRMYYSDRSLKHHMKLKHTTDEAVDCGLCGKICSNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYKRFESAKSCKIHLKLIHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAKDQIFKCETCNLVFNGQDKFEHHNELYHVSLPIKQKLLPCCILCMKDFSTRKTLKRHIKKFHQDFDPEELATYGSKRRMFNIDCEECIQNFNNDFYLDIYQKLKHLKDSIVFKCESCSSSYNCLEYSIQRHKLANLEPCKSKMVLSELCTAEMSDEASNGWVESVEAESTTGDLQVKEEPMDVDDIVKTEPMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680825;
90% Identity: iTF_00871549;
80% Identity: iTF_00871549;