Cdum025927.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829532.1:6007492-6009816[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1e-05 0.00078 20.5 4.3 1 23 6 29 6 29 0.95 2 19 0.00081 0.056 14.6 0.3 2 23 35 57 34 57 0.95 3 19 0.0001 0.0071 17.5 0.2 2 23 66 88 66 88 0.96 4 19 8.6e-06 0.0006 20.8 1.6 2 23 97 119 96 119 0.94 5 19 6.8e-05 0.0047 18.0 0.9 2 23 127 149 127 149 0.95 6 19 6.2e-07 4.3e-05 24.4 0.6 2 23 157 179 156 179 0.96 7 19 6.1e-06 0.00042 21.3 1.7 1 23 185 208 185 208 0.98 8 19 0.005 0.35 12.1 0.3 1 23 239 262 239 262 0.97 9 19 0.00013 0.0091 17.1 0.7 1 23 292 315 292 315 0.98 10 19 0.043 3 9.2 1.3 2 21 323 342 322 343 0.93 11 19 0.0018 0.12 13.6 0.5 2 23 352 374 352 374 0.96 12 19 0.0035 0.25 12.6 5.5 1 23 399 422 399 422 0.97 13 19 7.7e-05 0.0053 17.8 0.3 2 23 429 451 428 451 0.96 14 19 3.9e-05 0.0027 18.8 2.2 2 23 458 480 457 480 0.94 15 19 0.0091 0.63 11.3 2.2 1 23 486 509 486 509 0.97 16 19 0.28 20 6.6 4.8 2 23 517 539 517 539 0.95 17 19 6.4e-05 0.0044 18.1 0.2 1 23 546 569 546 569 0.97 18 19 0.67 47 5.4 5.7 1 23 576 599 576 599 0.92 19 19 0.027 1.9 9.8 2.2 5 23 616 635 613 635 0.89
Sequence Information
- Coding Sequence
- ATGTCTTCACCAGAATACGAGTGTGATTACTGCACTCGCACATTCACAAGAAAATACAACTTGTCAACTCATATAGAAAACTGTCATATAAACTCAACATGCTACTGCGATATATGTGATCAGAGGTTCGGTAGTCCAGCGGGCTTACAACTACACCTGAGCCGTGGCCACAACAGATTCTTTCAACCGTACCCAGAGTGTGACCTTTGCGGACGTATCTTTACTAGAAAACAAAACGTGGTTTCACACATGGTGACGGTCCATTTACAAGGAGTAGGTCCGCAGATTCGGTGTAATATCTGTTTTAAGACTTTCACTACGGAAAGGAATCTCAAACGGCACGTGAATCAACTGCATAATCCCGACGTTGAGTATCCGACTTGTGATTATTGTAGCAAAGTGTTTAAAGGCAAGCATTCTCTCATAGCCCACATTCAAGCCACACACAACGTCTTGAAGGAGATAATAAAATGCGAGTTGTGTGGTAAAGTTTACACGAATAACAGAAATCTGAAACGTCAtattgaaatgtttcacggcgAGAAGGGGGAATTCAGATGCGATCGCTGTCCTAAAGTCTACACGTCTAACCAGAGCTTGAGACGCCACGCCCGAACGAGACATAACACCGAAGAATTGATCTTCAAACCTGATGTTGAAATTATAGAAATTGAAGACACTAATGACGCCACATATGACTGTCAAACTCTTGAGTTCCCTTGTCCGTACTGCGATAATCACTACGCCGAAGAACCGATGCTGAGACAGCACGTGAAAACCGATCATCCATTCAAAGACTTCTACGAATACTGCAGGAACTCTTTACTCAAACAAATGACAGTTAAAACTGAGGAGAAACCGGttaaagttaattataattGTGAAAATTGCAGTTCCGTTTTTAACTCGGTTTATGATCTAAAAGATCATATGAGAACCAGTCATGACAGAGAGTACTCCCTTAGTACCTGCAACGTGTGCTTCAAAAAGTTTTACAGTAAAGAAACCATGTTTGAACATAAAAAAGTGTGTCTACCACCTCCCGATGTTAACAGTTGTAACTACTGTGATAAACTATTCACGGATATATCGAGCCTTGAGTTTCACATAAGGATTTTTCACCCGCAAGCTCAGATAGCAGACAATGATGTCACTTCGACTAATCTAGAAGATACGTCTACGGAAGCAGGTTCTTTCAAATGTGAACACTGCGACAGAATTTACTATAGCGACCGCTCTCTTAAACACCATATTAAATTGAAGCACACGACCGATGAGGTCGTTGAATGCGGTTTGTGCGGCAAAATCTGCAGTAACAAATACTACCTGGCGTCCCATATTAAGATAGTCCACAACAATGATTCTTGGTCAAAATGCGACTACTGTGACAAGCAATTTAAATCAAAGAGGAATATAAGGCGTCACATTGAGTACACGCATCTAGGAATGCAAAGATACAAGTGCATTGAATGTGAGACTTTATTCAAAGAGAAAAGAAGCCTCAGAAAGCATGTTAGAACTAAGCATCCTAATTCTACAATCTTCCCGCAATGCCATATTTGCTACAAGAGGTTCGAATCAGCCAAATCATGCAAGATACATCTCAAACTCTTACATTCATTTAACATGAATACATTCCCTTGCGATCTCTGCTCGGTGTCTTTCAGCTCCAACGAGGCTCTCAACATACACCTACAGACTAAGCATCTAGCCGAAGACCAGATCTTCAAATGTGAACAATGCAACCTCGTCTTCAACGGCCACGAGAAATTCGAGCACCACAACGAAATATGCCACGTGAATCTGCTTCCGAACATAAAACAGAAAGTCTTGCCGCGTTGCATTATATGCATCAAAGATTTCAGTACTCGCAAGACTTTGAAGCGCCATATAAAAAAGTTTCACGACGATTTTGATGCAGAAGAATTAGCTACGTACGGGTCTAAAAAGAGATTGTTTAACATCGAGTGTGATGAATGCATACAGAACTTCAATGACGATTTCTACTACGATGTGTATCAGAAGTTGAAGCATTTAAAAGACTCTATAGTCTTCAAGTGCGAGAGCTGCAGCTCGTCCTACGATTGCCTTGAATATTCTATCCAGAGATATAAAGTTGTGAATTTGGAAGCTTGCAAAAGTAAAATGATTCTAAGTGAGCTGTGTACCGCGGAAATGAGTGATGATGAGACCTCGAATAGTAGGTTGGGTGGGGAGAGTATGGAGCCAGAGAGTACCACGGGGGACATCACTGTTAAGACGGAACCCATGGACTTCGAGGTAGATGCTGATGTTAAGGCTAAGCTTAAGCCTATGACGCCgtag
- Protein Sequence
- MSSPEYECDYCTRTFTRKYNLSTHIENCHINSTCYCDICDQRFGSPAGLQLHLSRGHNRFFQPYPECDLCGRIFTRKQNVVSHMVTVHLQGVGPQIRCNICFKTFTTERNLKRHVNQLHNPDVEYPTCDYCSKVFKGKHSLIAHIQATHNVLKEIIKCELCGKVYTNNRNLKRHIEMFHGEKGEFRCDRCPKVYTSNQSLRRHARTRHNTEELIFKPDVEIIEIEDTNDATYDCQTLEFPCPYCDNHYAEEPMLRQHVKTDHPFKDFYEYCRNSLLKQMTVKTEEKPVKVNYNCENCSSVFNSVYDLKDHMRTSHDREYSLSTCNVCFKKFYSKETMFEHKKVCLPPPDVNSCNYCDKLFTDISSLEFHIRIFHPQAQIADNDVTSTNLEDTSTEAGSFKCEHCDRIYYSDRSLKHHIKLKHTTDEVVECGLCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTIFPQCHICYKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFSSNEALNIHLQTKHLAEDQIFKCEQCNLVFNGHEKFEHHNEICHVNLLPNIKQKVLPRCIICIKDFSTRKTLKRHIKKFHDDFDAEELATYGSKKRLFNIECDECIQNFNDDFYYDVYQKLKHLKDSIVFKCESCSSSYDCLEYSIQRYKVVNLEACKSKMILSELCTAEMSDDETSNSRLGGESMEPESTTGDITVKTEPMDFEVDADVKAKLKPMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- iTF_00462589;
- 80% Identity
- iTF_00342392;