Efoe038044.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747121.1:9048376-9050637[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.6e-06 0.00037 22.0 4.1 1 23 5 28 5 28 0.95 2 19 0.0012 0.096 14.4 0.1 2 23 34 56 33 56 0.95 3 19 0.00012 0.0097 17.5 0.2 2 23 65 87 65 87 0.96 4 19 9.5e-08 7.5e-06 27.3 1.4 2 23 96 118 95 118 0.95 5 19 0.00016 0.013 17.1 1.3 2 23 126 148 126 148 0.95 6 19 1.8e-06 0.00014 23.3 2.2 2 23 156 178 155 178 0.96 7 19 0.00021 0.017 16.7 1.2 1 23 184 207 184 207 0.96 8 19 0.00086 0.068 14.8 0.3 1 23 234 257 234 257 0.97 9 19 0.00016 0.013 17.1 0.7 1 23 283 306 283 306 0.98 10 19 3.2 2.6e+02 3.6 1.0 3 21 315 333 313 334 0.91 11 19 0.0027 0.21 13.3 0.5 3 23 344 365 343 365 0.96 12 19 0.0065 0.52 12.1 6.4 1 23 387 410 387 410 0.97 13 19 0.0002 0.016 16.8 0.3 2 23 417 439 416 439 0.96 14 19 0.00016 0.013 17.1 2.2 2 23 446 468 445 468 0.94 15 19 0.011 0.86 11.4 2.2 1 23 474 497 474 497 0.97 16 19 0.34 27 6.7 4.8 2 23 505 527 505 527 0.95 17 19 0.00015 0.012 17.2 0.1 1 23 534 557 534 557 0.98 18 19 0.46 36 6.3 0.5 1 22 564 585 564 587 0.89 19 19 0.056 4.4 9.1 2.8 5 23 602 621 599 621 0.90
Sequence Information
- Coding Sequence
- ATGTCTCAGGAATACGTCTGCGATTATTGCACCCGTACTTTTACAAGGAAGTACAACCTTCAGAGCCACATAGAGAACTGCCATGTCAACTCCACAAGCTACTGTGATATCTGCGACCAACGGTTCGGAAGCCCGGCCGGACTCCAACTCCACCTCAGCCGAGGCCACAACCGCTTCATGCAGCCCTACCCAGAATGCGACCTTTGCGGACGAATCTTCACTAGAAAACAGAATGTTGTCTCACACATGGTGACCGTCCATTTACAAGGCATCGGTCCCCAGATACAGTGCAAGGTTTGTGGCAAGACTTTCACTACGGAAAGGAATTTGAAACGACATATGAATCAGTTACATAACCCTGACGTTCAATACCCTACTTGCGATTACtgtaaaaaagcatttaaaggCAAGCATTCGTTGTTGGCTCATATACAAGCTACTCACAACGTTTTAAAAGGTATAATTAAGTGTCATCTTTGTGATAAAGTTTACACTAATAATAGGAATTTGAAGCGGCATATAGAAATGTACCATGGCGAGAAGGGGgagtttaaatgtattttatgtccTAAAGTATACACTTCTAATCAGAGTCTTCGAAGGCATGCCAGAACTAGGCATAATACTGACCAGGATAGAACAGACTCTTTGGAGCATGATGATTATTACAACTACGATTTTAAAGTACAGCTTCAAGAATACAATTGTGATTATTGCGAACAATTCTTCCCTGACGAACCAACTTTACGCCAACATGTGAAGTCTGACCATCCTTTCAGAATGTTCTATGAATATTGCAGAAATTCGCTACTCAAACAAACGGGGAAGAGCGAGAAAGAGAGATTTTACAATTGCGAGAGCTGCAATAACGTTTTTAACTCAGTTTACGAATTGAAGGACCACATGAGAACCAGTCATGATAGAGAATATTCTTTATCAAATTGTAATGTTTGCTTCTCAAAGTTCTACAGCAAAGAGACTATGTTTGAGCATAAGAAGATATGCCTCCCGCCGCCTAACGTGAACAACTGCAATTATTGTGATAAACTCTTCACAGATATATCCAGTCTCGAGTTTCATATTAGAATCTTCCACCCCCAAGCCCAAATAGCTGACAACGACGTCTCATCAACGAACCACGACGAAACTGAGGGTGGTTTTAAATGCGTGCACTGCGACAGGATGTACTATAGCGACCGATCTCTAAAACACCATATGAAGCTGAAGCACACAACGGACGAGGCCGTCGAATGCGGCTTGTGCGGGAAAATATGCAATAATAAGTATTATCTAGCTTCTCACATCAAAATCGTGCACAATAATGACTCCTGGTCGAAATGCGATTATTGCGAGAAGCAATTTAAATCTAAACGAAATATAAGACGACACATAGAATATACACACTTGGGCATGCAGCGATATAAGTGTATAGAGTGTGAAACTCTTTTCAAAGAGAAACGGAGTCTTAGAAAACACGTCCGCACGAAGCATCCGAACTCAACAGTGTTCCCACAGTGTCATATCTGTTACAAACGCTTCGAATCTGCAAAGTCCTGCAAGATTCATTTAAAACTGCTACATTCGTTCAACATGAATACTTATCCTTGTGATCTGTGTTCAGTATCATTCAGCTCGAATGAAGCGTTGTCGATCCACCTCCAAACTAAGCATTTAGCTGAGGACCAGATCTTTAAATGCGAGCCGTGTAACCTAGTATTCAACGGGCAGGACAAATTTGAACAACACAATGAACTCAACCACATCAGTCTGCCGACGCAACAAAAGTTGCTACCCCGCTGCATCTTATGCATGAAAGACTTTAGTACGAGGAAAACTCTGAAGCGTCATATCAAAAAATTCCATGGTGACTTTGATCCGGAAGAACTAGCAACATACGGCTCTAAGAAGCGTATGTTCAATATCGATTGCGAGGAATGCATACAGAATTTCAACGATGATTTCTACTTGGATATCTATCAAAAACTGAAGCATTTAAAAGACTCCATTGTCTTTCAATGCGAAAGCTGCTCAAGCTCATACAACTGTCTGGAATATTCTATTCAGAGACATAAAGTCAGTAACACAGAGTCATGTAAGACTAAGATGATTCTTAGCGAGCTCTGTACAGCGGAGATGAGTGATGCGTCAAATGGTGGGTGGGTGGAGTCGGTGGAAGCTGAAAGTACTACTGGTGACTTGAATGTAAAGGAGGAACCAATGGAAGTGGAAGATATAGTGAAGATTGAGCCTATGTCGCCGTGA
- Protein Sequence
- MSQEYVCDYCTRTFTRKYNLQSHIENCHVNSTSYCDICDQRFGSPAGLQLHLSRGHNRFMQPYPECDLCGRIFTRKQNVVSHMVTVHLQGIGPQIQCKVCGKTFTTERNLKRHMNQLHNPDVQYPTCDYCKKAFKGKHSLLAHIQATHNVLKGIIKCHLCDKVYTNNRNLKRHIEMYHGEKGEFKCILCPKVYTSNQSLRRHARTRHNTDQDRTDSLEHDDYYNYDFKVQLQEYNCDYCEQFFPDEPTLRQHVKSDHPFRMFYEYCRNSLLKQTGKSEKERFYNCESCNNVFNSVYELKDHMRTSHDREYSLSNCNVCFSKFYSKETMFEHKKICLPPPNVNNCNYCDKLFTDISSLEFHIRIFHPQAQIADNDVSSTNHDETEGGFKCVHCDRMYYSDRSLKHHMKLKHTTDEAVECGLCGKICNNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAEDQIFKCEPCNLVFNGQDKFEQHNELNHISLPTQQKLLPRCILCMKDFSTRKTLKRHIKKFHGDFDPEELATYGSKKRMFNIDCEECIQNFNDDFYLDIYQKLKHLKDSIVFQCESCSSSYNCLEYSIQRHKVSNTESCKTKMILSELCTAEMSDASNGGWVESVEAESTTGDLNVKEEPMEVEDIVKIEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- iTF_01072763;
- 80% Identity
- iTF_00654482;