Cpom036332.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066370.1:5643447-5645720[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.8e-06 0.0004 21.9 3.6 1 23 4 27 4 27 0.95 2 19 0.001 0.087 14.6 0.3 2 23 33 55 32 55 0.95 3 19 4.1e-05 0.0034 19.0 0.1 2 23 64 86 64 86 0.96 4 19 4.1e-07 3.5e-05 25.3 0.8 2 23 95 117 94 117 0.95 5 19 0.00022 0.019 16.7 1.8 2 23 125 147 125 147 0.95 6 19 6.2e-06 0.00052 21.6 2.2 2 23 155 177 154 177 0.96 7 19 3.9e-06 0.00032 22.2 1.7 1 23 183 206 183 206 0.98 8 19 0.0034 0.28 12.9 0.2 3 23 239 260 237 260 0.95 9 19 6.7e-05 0.0055 18.3 0.7 1 23 286 309 286 309 0.98 10 19 1.9 1.6e+02 4.3 1.0 2 21 317 336 316 337 0.92 11 19 0.0054 0.45 12.3 1.5 3 23 347 368 346 368 0.96 12 19 0.00094 0.078 14.7 5.6 1 23 390 413 390 413 0.97 13 19 0.00075 0.063 15.0 0.7 3 23 421 442 421 442 0.97 14 19 0.00016 0.013 17.1 2.2 2 23 449 471 448 471 0.94 15 19 0.011 0.9 11.4 2.2 1 23 477 500 477 500 0.97 16 19 0.34 28 6.7 4.8 2 23 508 530 508 530 0.95 17 19 0.00023 0.019 16.6 0.2 1 23 537 560 537 560 0.98 18 19 0.14 12 7.9 0.5 1 23 567 590 567 590 0.92 19 19 0.034 2.8 9.8 3.4 3 23 602 624 600 624 0.90
Sequence Information
- Coding Sequence
- ATGGCAGAATATGTCTGCGATTACTGCACCCGCACATTCACCAGAAAGTACAATCTCGAAACACATATAGAGAACTGCCACATCAACTCCACATGCTACTGCGAGATATGCGACACCAGGTTCGGAAGCCCGGCCGGCCTCCAGCTCCATCTCAGCCGAGGGCACAACCGATTCATGCAACCTTACCCCGAGTGTGACATCTGCGGACGAATCTTCactagaaaacaaaatgtagTCTCACACATGGTCACCGTTCACCTCCAAGGCGTCGGGCCTCAGATACAGTGCCCCACTTGTGGCAAGACATTTACAACGGAAAGGAACCTGAAGAGACATGTAAACCAACTACATAACCCTGATGTTCAATACCCAACCTGTGACTACTGCAAAAGGTCCTTTAAAGGCAAACACTCCCTATTAGCTCATATACAGGCAACTCATAACATTTTAAAAGGAATTATCAAATGCCATCTATGTGAAAAAGTATACACAAATAACAGGAATCTGAAGCGACATATAGAAATGTATCATGGGGAAAAAGGAGAGTTCAGATGTACGCTGTGCCCTAAAGTTTATACATCGAATCAAAGCTTGCGTCGGCACGCCCGAACCAGACATAATACGGACCAAGAATATAAAACAGACCTTAATATGGAACAGGATACTAcagattattataattatgactTTAAGGTGCAGCTTCAAGAAATCAATTGCGAATATTGTGAACAGTATTTTGATGACGAACCTACTTTACGCCGGCATGTCAAATCCGATCATACTTTTAAGATGTTCTATGAGTACTGCAGAAATTCCTTGCTAAAACAGATGGGGAAGAGTGAGAAAGAAAGCTTTTATAATTGCGAGAATTGCAACAGTGTGTTTAACTCTGTCTACGAACTTAAAGACCACATGAGAACCAGTCACGATAGAGAATATTCACTGTCAACCTGTAATGTTTGCTTCTCCAAGTTTTACAGCAAAGAAACCATGTTTGAGCATAAAAAGATTTGCCTTCCACCGCCAAATGTAAACCACTGCAACTATTGCGACAAATTATTTACAGACATCTCAAGTCTAGAGTTTCATATTAGGATTTTCCATCCCCAAGCCCAAATAGCTGACAATGATGTGTCTTCAACTAACCCGGAAGAGTCTGAGGCTGGTTTTAAATGTCCTCACTGCGATAGGATGTATTACAGTGATCGCTCTTTAAAGCACCATATAAAACTCAAACACACCACCGATGAAGCTGTAGGTTGCGGTTTATGTGGGAAAATctgtaataacaaatattatctAGCATCTCACATCAAAATTGTACACAACAACGACTCCTGGTCGAAGTGTGACTATTGTGAGAAACAATTTAAATCTAAAAGGAATATTCGTCGTCACATTGAGTATACACATTTAGGCATGCAGCGCTATAAATGTATCGAATGTGAGACACTTTTTAAAGAGAAACGGAGCCTCAGAAAGCATGTCCGGACTAAACATCCCAACTCAACAGTATTCCCGCAGTGTCATATCTGTTACAAGCGCTTCGAATCTGCAAAGTCCTGTAAGATTCATCTCAAACTACTCCATTCCTTCAACATGAACACATACCCCTGCGATCGCTGCTCTGTATCCTTCAGCTCCAATGAAGCATTATCAATACATCTTCAAACGAAACACTTAGCTAAAGACCAGATCTTCAAATGCGAACCATGCAACCTAGTTTTCACGGGACAGGACAAATTCGAACAACATAACGAAATATTTCACGTAATACCAAACGTAACACAAAAGATTCTACCCTGCTGCATATTATGTATGAAGGATTTCAGTACGCGAAAAACGTTAAAGCGTCATATCAAGAAATTCCATAATGATTTCGACGCAGAAGAACTAGCGACATATGGGTCTAAGAAACGCATGTTTAATATAGAATGCGAGGAATGTATTCAGAATTTCAACAACGATTTTTACTTAGATATATATCAGAAGTGGAAACATTTGAAAGATTCTATTGTTTTTAAGTGTGAGAGCTGTTCATCTTCTTATAACTGCTTGGAATATTCCATACAAAGGCATAAGACGACCAATATGGAAGCATGTAAGAGCAAGATGATATTAAGTGAGTTGTGTACTGCGGAGATGAGCGATGAGGCTTCTAATAGTGGTTGGGTGGAGTCGGTGGAAGCGGAGAGCACTACAGGAGATATAAATGTGAAGGAAGAGCCTATGGAGGTGGAAGATATTGTCAAGACTGAACCTATGTCGCcatga
- Protein Sequence
- MAEYVCDYCTRTFTRKYNLETHIENCHINSTCYCEICDTRFGSPAGLQLHLSRGHNRFMQPYPECDICGRIFTRKQNVVSHMVTVHLQGVGPQIQCPTCGKTFTTERNLKRHVNQLHNPDVQYPTCDYCKRSFKGKHSLLAHIQATHNILKGIIKCHLCEKVYTNNRNLKRHIEMYHGEKGEFRCTLCPKVYTSNQSLRRHARTRHNTDQEYKTDLNMEQDTTDYYNYDFKVQLQEINCEYCEQYFDDEPTLRRHVKSDHTFKMFYEYCRNSLLKQMGKSEKESFYNCENCNSVFNSVYELKDHMRTSHDREYSLSTCNVCFSKFYSKETMFEHKKICLPPPNVNHCNYCDKLFTDISSLEFHIRIFHPQAQIADNDVSSTNPEESEAGFKCPHCDRMYYSDRSLKHHIKLKHTTDEAVGCGLCGKICNNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDRCSVSFSSNEALSIHLQTKHLAKDQIFKCEPCNLVFTGQDKFEQHNEIFHVIPNVTQKILPCCILCMKDFSTRKTLKRHIKKFHNDFDAEELATYGSKKRMFNIECEECIQNFNNDFYLDIYQKWKHLKDSIVFKCESCSSSYNCLEYSIQRHKTTNMEACKSKMILSELCTAEMSDEASNSGWVESVEAESTTGDINVKEEPMEVEDIVKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- iTF_00409513;
- 80% Identity
- -