Talt004801.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:24502167-24504458[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3e-06 0.00019 22.0 4.2 1 23 6 29 6 29 0.95 2 19 0.002 0.13 13.1 0.2 2 23 35 57 34 57 0.94 3 19 8.1e-05 0.0052 17.5 0.2 2 23 66 88 66 88 0.96 4 19 1.6e-05 0.0011 19.7 1.4 2 23 97 119 96 119 0.94 5 19 0.00012 0.0075 17.0 1.3 2 23 127 149 127 149 0.95 6 19 1.2e-06 7.6e-05 23.2 2.2 2 23 157 179 156 179 0.96 7 19 2.3e-06 0.00014 22.4 1.3 1 23 185 208 185 208 0.98 8 19 0.00038 0.024 15.4 2.8 1 23 236 259 236 259 0.97 9 19 0.0001 0.0067 17.1 0.5 1 23 287 310 287 310 0.97 10 19 0.19 12 6.9 0.9 2 21 318 337 317 338 0.93 11 19 0.0024 0.15 12.8 0.6 2 23 347 369 347 369 0.96 12 19 0.0072 0.46 11.4 5.9 1 23 394 417 394 417 0.97 13 19 2.1e-05 0.0013 19.4 0.2 2 23 424 446 423 446 0.96 14 19 3.1e-05 0.002 18.8 2.2 2 23 453 475 452 475 0.94 15 19 0.0072 0.46 11.4 2.2 1 23 481 504 481 504 0.97 16 19 0.22 14 6.7 4.8 2 23 512 534 512 534 0.95 17 19 3.7e-05 0.0024 18.6 0.1 1 23 541 564 541 564 0.98 18 19 0.019 1.2 10.0 2.0 1 23 571 594 571 594 0.92 19 19 0.017 1.1 10.2 2.7 3 23 609 630 608 630 0.91
Sequence Information
- Coding Sequence
- ATGGCATCGTCAGAATATGTTTGCGACTACTGTACTCGCACTTTCACAAGGAAATACAACCTCCAAACACATATAGAGAACTGCCACATTAACTCTACGTGTAATTGTGAAATCTGTGACCAACAGTTTGGCAGTCCTGCTGGCTTACAACTGCATCTAAGTCGGGGCCATAACCGATTTGCTCAACCGTACCCCGAATGCGACCTCTGCGGCCGCATCTTCACAAGAAAGCAGAATGTCGTCTCGCATATGGTTACCGTACATCTGCAGGGCGTAGGTCGGCAAATCCAGTGTTATATTTGCTTCAAAAGCTTCACTACGGAGAGGAACTTGAAGAGGCATGTGAATCAGTTGCATAACCCTGACGTTGTATATCCTACGTGTGATTACTGTAAGAAAGAGTTCAAAGGAAAGCACTCTCTGATTGCGCACATCCAAGCCACGCATAATATGCTGAAAGGAATCATAAAATGTCACTTGTGCGACAAAGTATACACTAACAACAGGAACTTGAAAAGACATATTGAAATGTATCACGGAGAGAAAGGCCAGTTCAGGTGTGATCTGTGCCCTAAAGTCTATACTTCCAATCAGAGTTTGAGACGCCATGCTCGCACAAGACATAACACAGAGGAGAAATCAGATTTCAATATGGATCAAGACACAAATGATTATTGCAATTTCGAATATATTACTAAACTGGAATTTCCATGTTCATATTGTGAGAAACATTTCTCTGAAGAACCAATGCTACGTCATCATGTGAAAACTGAGCATACGTTTAAAATATTCTATGATTATTGCAAGAACTCTTTATTAAAACAAATGGATAAGACGGAAAAGGAAAAGTCTGTTTATTATAAGTGCGAAAGTTGTAATAACGCTTTTAGCTCTGTGTACGAATTAAAAGATCATATGAGGGCGAGTCACGATAGAGAATACTCATTATCCACTTGCAACGTATGCTTCACTAAGTTCTACAGTAAAGAAACTATAAAAGAACATAAGAAAATATGTCTCCCGCCACCAAACGTGAACTCTTGTAACTATTGCGATAAGTTATTCACAGATATGTCAAGTTTAGTGTTTCATATACGGATCTTCCATCCGCAAGCTCAAATTGCGGATAACGATGTTACTTCTACGAACCCTGAAGATTTGTCAACGGACGCTGGTGCTTTCAAATGCGTCCACTGTGACAGAATGTACTACAGCGACCGTTCTCTGAAACATCACATCAAGTTAAAACATACTACAGATGAAGCAGTAGAATGTGGTATCTGCGGTAAGATATGCAGCAACAAATATTATTTGGCCTCTCATATTAAAATCGTACATAACAACGACTCCTGGTCGAAATGTGATTACTGTGACAAACAGTTCAAATCCAAGAGAAATATACGACGTCATATCGAATACACTCATTTGGGTATGCAGAGGTACAAATGTATTGAATGCGAAACTCTGTTCAAAGAGAAACGGAGCCTTCGGAAGCACGTACGCACCAAGCATCCTAATTCAACGGTGTTCCCCCAATGCCATATATGTTACAAAAGATTTGAGTCTGCCAAATCTTGCAAGATACATCTGAAACTGCTACATTCTTTCAACATGAATACGTACCCATGCGATCTTTGCTCAGTTTCCTTCAGCTCGAGTGAGGCGCTTAATATCCATTTACAAACGAAGCACTTAGCCGAAGACCAGATTTTTAAATGCGAGCAATGCAACCTGGTTTTCAACGGACAGGAGAAGTTTGAGCAGCACAATGAAGTATGCCACGTGAATTTACTTCCCAACATAAAGCAGAAGGTGCTGCCTCGCTGTATTATTTGTATGAAGGATTTCAGTACGCGGAAGACACTGAAACGGCATATCAAGAAGTTCCACGAGGACTTTGACCCGGAGGAGCTGGCTACATACGGATCCAAGAATCGTATGTTTAACATAGAATGCGAGGAATGCATACAGAATTTTAGTGAGAACTTCTATTTTGAAGTGTATCAAAAGCTGAAACATTTGAGGGACTCTATTATTTTCAAGTGCGAGAGCTGTTCCATGTCATATGATTGTTTGGAATACGCCATTCAGAGGTATAAAGTGGCTAATACGGAGACGTCAAAAAGTAAGATGATTCTCAGCGAGTTGTGTACAGCTGAGATGAGTGATGAAGGCTCCAATACTTTCGGGTTTGAATGTATGGAGCCGGAGAGTACGACAGGTGACAGTGTGAAGATTGAACCCATGGATTATGAGGAAACGGAAGTTAAGACTGAACCTATGACATCGTAA
- Protein Sequence
- MASSEYVCDYCTRTFTRKYNLQTHIENCHINSTCNCEICDQQFGSPAGLQLHLSRGHNRFAQPYPECDLCGRIFTRKQNVVSHMVTVHLQGVGRQIQCYICFKSFTTERNLKRHVNQLHNPDVVYPTCDYCKKEFKGKHSLIAHIQATHNMLKGIIKCHLCDKVYTNNRNLKRHIEMYHGEKGQFRCDLCPKVYTSNQSLRRHARTRHNTEEKSDFNMDQDTNDYCNFEYITKLEFPCSYCEKHFSEEPMLRHHVKTEHTFKIFYDYCKNSLLKQMDKTEKEKSVYYKCESCNNAFSSVYELKDHMRASHDREYSLSTCNVCFTKFYSKETIKEHKKICLPPPNVNSCNYCDKLFTDMSSLVFHIRIFHPQAQIADNDVTSTNPEDLSTDAGAFKCVHCDRMYYSDRSLKHHIKLKHTTDEAVECGICGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSSEALNIHLQTKHLAEDQIFKCEQCNLVFNGQEKFEQHNEVCHVNLLPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHEDFDPEELATYGSKNRMFNIECEECIQNFSENFYFEVYQKLKHLRDSIIFKCESCSMSYDCLEYAIQRYKVANTETSKSKMILSELCTAEMSDEGSNTFGFECMEPESTTGDSVKIEPMDYEETEVKTEPMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- -
- 80% Identity
- -