Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387701.1:4029739-4032012[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0029 4.4 8.0 1.3 18 43 5 27 3 28 0.92

2 17 0.001 1.6 9.4 0.0 18 43 64 86 62 87 0.93

3 17 0.0027 4.1 8.1 0.2 17 43 94 117 91 118 0.91

4 17 0.024 37 5.0 1.4 18 43 125 147 120 148 0.88

5 17 0.0015 2.2 8.9 6.6 14 43 151 177 141 178 0.86

6 17 0.0049 7.5 7.3 0.8 17 44 183 207 179 207 0.89

7 17 0.052 79 4.0 0.0 4 43 226 260 223 261 0.80

8 17 0.043 65 4.2 0.7 12 43 281 309 269 310 0.90

9 17 0.0091 14 6.4 0.0 15 44 343 369 339 369 0.85

10 17 0.51 7.8e+02 0.8 3.7 18 43 391 413 383 414 0.87

11 17 1.3 2e+03 -0.5 9.1 5 29 407 431 403 443 0.73

12 17 0.00071 1.1 9.9 2.9 12 43 443 471 434 472 0.78

13 17 0.046 70 4.2 0.8 17 44 477 501 473 501 0.85

14 17 1.5 2.3e+03 -0.7 0.2 34 43 551 560 539 561 0.80

15 17 4.6 7e+03 -2.3 0.4 12 27 562 577 557 580 0.78

16 17 0.00041 0.62 10.7 1.6 19 44 603 625 593 625 0.95

17 17 3 4.6e+03 -1.7 0.6 15 35 672 698 662 700 0.65

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0029	4.4	8.0	1.3	18	43	5	27	3	28	0.92
2	17	0.001	1.6	9.4	0.0	18	43	64	86	62	87	0.93
3	17	0.0027	4.1	8.1	0.2	17	43	94	117	91	118	0.91
4	17	0.024	37	5.0	1.4	18	43	125	147	120	148	0.88
5	17	0.0015	2.2	8.9	6.6	14	43	151	177	141	178	0.86
6	17	0.0049	7.5	7.3	0.8	17	44	183	207	179	207	0.89
7	17	0.052	79	4.0	0.0	4	43	226	260	223	261	0.80
8	17	0.043	65	4.2	0.7	12	43	281	309	269	310	0.90
9	17	0.0091	14	6.4	0.0	15	44	343	369	339	369	0.85
10	17	0.51	7.8e+02	0.8	3.7	18	43	391	413	383	414	0.87
11	17	1.3	2e+03	-0.5	9.1	5	29	407	431	403	443	0.73
12	17	0.00071	1.1	9.9	2.9	12	43	443	471	434	472	0.78
13	17	0.046	70	4.2	0.8	17	44	477	501	473	501	0.85
14	17	1.5	2.3e+03	-0.7	0.2	34	43	551	560	539	561	0.80
15	17	4.6	7e+03	-2.3	0.4	12	27	562	577	557	580	0.78
16	17	0.00041	0.62	10.7	1.6	19	44	603	625	593	625	0.95
17	17	3	4.6e+03	-1.7	0.6	15	35	672	698	662	700	0.65

Sequence Information

Coding Sequence: ATGGCAGAATATGTCTGCGATTACTGCACCCGTACCTTCACCAGAAAATACAACCTTGAAACACATATAGAGAACTGCCACGTTAACTCCACATGCTACTGCGAGATCTGCGACACGAGGTTCGGAAGCCCGGCCGGCCTCCAGCTCCACTTCAGCCGAGGACACAATCGCTTCCTACAGCCTTACCCCGAATGCGACATCTGCGGACGAATCTTCACTAGAAAACAAAATGTTGTCTCACACATGGTCACCGTTCACCTCCAAGGCATCGGGCCTCAGATACAGTGCCCCACTTGTGGCAAGACATTCACAACGGAAAGGAACTTAAAGAGACATGTTAACCAGTTACATAACCCCGATGTTCAATACCCAACCTGTGACTACTGCAAAAGATCCTTTAAAGGCAAACACTCCCTCTTAGCTCACATACAGGCAACTCATAACATTTTAAAAGGAATTATCAAATGTCATCTATGTGAAAAAGTTTACACAAATAATAGAAATCTGAAGCGACATATAGAAATGTATCATGGAGAAAAAGGCGAGTTCAGATGTACGCTGTGCCCTAAAGTTTACACATCGAATCAAAGCTTGCGTCGGCACGCCAGAACCAGGCATAATACAGACCAGGAATATAAAGGGGACTATAACATGGAACAAGACACTGCAGATTATTATAACTATGACTTTAAAGTGCAGCTTCAAGAATTCAATTGCGAATATTGCGAACAATTTTTTGAAGACGAACCTACTTTACGCCGGCATGTCAAATCTGATCATGCTTTTAAACTGTTCTATGAGTACTGCAGAAATTCCTTGCTAAAACAGATGGGGAAGAGTGAGAAAGAAAGCTTTTATAATTGCGAGAATTGTAATAGTGTGTTTAACTCTGTCTATGAACTTAAAGACCACATGAGAACCAGTCATGATAGAGAATATTCGCTATCAACCTGTAATGTTTGCTTCTCAAAGTTTTACAGCAAAGAAACCATGTTTGAGCACAAAAAGGTTTGCCTGCCACCGCCTAATGTAAACAACTGCAACTATTGCGACAAATTATTTACAGATATCTCAAGTCTAGAGTTTCATATCAGGATTTTTCATCCCCAAGCCCAAATAGCTGACAATGATGTGTCTTCTACCAACCCGGAAGATACTGAGGCTGGTTTTAAATGTCCTCACTGCGATAGGATGTATTACAGTGACCGCTCTTTAAAGCACCATATGAAACTCAAACATACTACTGATGAAGTTGTAGCTTGCGGATTATGTGGAAAAATCTGTAATAACAAATATTATTTGGCATCCCACATCAAAATTGTACACAACAATGACTCCTGGTCCAAATGTGACTATTGTGAGAAACAATTTAAATCTAAAAGGAATATTCGTCGCCACATTGAGTATACACATTTAGGCATGCAGCGCTACAAATGCATCGAATGTGAGACGCTTTTTAAAGAGAAACGGAGCCTCAGAAAGCATGTTCGGACTAAGCATCCCAATTCTACAGTATTCCCGCAGTGTCATATCTGTTACAGGCGCTTCGAATCCGCAAAATCCTGTAAGATTCATCTCAAGCTACTTCACTCCTTCAACATGAACACATACCCCTGCGATCGTTGCTCTGTATCCTTCAGTTCCAATGAAGCGTTATCAATCCATCTCCAGACGAAACACTTAGCTAAAGACCAGATCTTCAAATGCGAACCATGTAACCTAGTCTTCGCGGGACAGGAAAAATTTGAACAACACAAAGAAATATTTCACGTAATACCGAACGTAACGCAAAAGATTTTACCCTGCTGCATATTATGTATGAAGGATTTCAGTACACGAAAAACTTTAAAGCGGCATATTAAGAAGTTCCATAACGATTTTGATGCAGAAGAACTAGCAACATATGGCTCTAAGAAACGCATGTTCAATATAGAATGTGAGGAATGTATACAGAATTTCAACAACGATTTTTACTTAGATATATATCAGAAACTTAAGCATTTGAAAGATTCTATTGTTTTTAAGTGCGAGAGCTGTTCATCATCTTATAACTGCTTGGAATATTCTATACAGAGGCATAAGACGACTAATATGGCCGCATGTAAGGGTAAGATGATTTTAAGTGAGTTGTGTACTGCGGTGATGAGCGACGAGGCGTCTAATAGTGCTCGGGTGGAGTCGGTGGAAGCAGAGAGCACTACAGGAGATATAAATATAAAGGAAGAGCCTATGGAGGTAGAAGATATTGTAAAGACTGAACCTATGTCGCCATGA
Protein Sequence: MAEYVCDYCTRTFTRKYNLETHIENCHVNSTCYCEICDTRFGSPAGLQLHFSRGHNRFLQPYPECDICGRIFTRKQNVVSHMVTVHLQGIGPQIQCPTCGKTFTTERNLKRHVNQLHNPDVQYPTCDYCKRSFKGKHSLLAHIQATHNILKGIIKCHLCEKVYTNNRNLKRHIEMYHGEKGEFRCTLCPKVYTSNQSLRRHARTRHNTDQEYKGDYNMEQDTADYYNYDFKVQLQEFNCEYCEQFFEDEPTLRRHVKSDHAFKLFYEYCRNSLLKQMGKSEKESFYNCENCNSVFNSVYELKDHMRTSHDREYSLSTCNVCFSKFYSKETMFEHKKVCLPPPNVNNCNYCDKLFTDISSLEFHIRIFHPQAQIADNDVSSTNPEDTEAGFKCPHCDRMYYSDRSLKHHMKLKHTTDEVVACGLCGKICNNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYRRFESAKSCKIHLKLLHSFNMNTYPCDRCSVSFSSNEALSIHLQTKHLAKDQIFKCEPCNLVFAGQEKFEQHKEIFHVIPNVTQKILPCCILCMKDFSTRKTLKRHIKKFHNDFDAEELATYGSKKRMFNIECEECIQNFNNDFYLDIYQKLKHLKDSIVFKCESCSSSYNCLEYSIQRHKTTNMAACKGKMILSELCTAVMSDEASNSARVESVEAESTTGDINIKEEPMEVEDIVKTEPMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680825;
90% Identity: iTF_00409513;
80% Identity: iTF_00412734;