Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388225.1:2556116-2558377[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0026 4.9 8.2 1.5 18 43 6 28 4 29 0.93

2 18 6.3 1.2e+04 -2.6 0.4 19 43 35 56 32 57 0.55

3 18 0.0024 4.5 8.3 0.0 18 43 65 87 64 88 0.92

4 18 3.5e-05 0.065 14.2 1.1 17 44 95 119 93 119 0.92

5 18 0.0027 5.1 8.1 0.8 18 43 126 148 121 149 0.88

6 18 0.00037 0.69 10.9 2.1 15 43 153 178 150 179 0.89

7 18 0.0052 9.5 7.3 0.8 17 44 184 208 180 208 0.89

8 18 0.0037 6.9 7.7 0.0 3 44 221 257 219 257 0.86

9 18 0.019 34 5.5 0.2 13 43 278 305 268 306 0.89

10 18 0.0095 18 6.4 0.0 15 44 339 365 335 365 0.85

11 18 0.34 6.2e+02 1.5 4.2 17 43 386 409 377 410 0.85

12 18 0.73 1.3e+03 0.4 8.4 6 29 404 427 400 439 0.71

13 18 0.0021 3.8 8.5 2.6 12 43 439 467 430 468 0.78

14 18 0.048 89 4.2 0.8 17 44 473 497 469 497 0.85

15 18 7.4 1.4e+04 -2.8 0.9 18 27 504 513 502 522 0.81

16 18 0.86 1.6e+03 0.2 0.3 19 43 535 556 531 557 0.72

17 18 4.7 8.7e+03 -2.2 1.3 12 27 558 573 551 579 0.67

18 18 4.5e-05 0.084 13.8 1.1 8 43 588 620 584 621 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0026	4.9	8.2	1.5	18	43	6	28	4	29	0.93
2	18	6.3	1.2e+04	-2.6	0.4	19	43	35	56	32	57	0.55
3	18	0.0024	4.5	8.3	0.0	18	43	65	87	64	88	0.92
4	18	3.5e-05	0.065	14.2	1.1	17	44	95	119	93	119	0.92
5	18	0.0027	5.1	8.1	0.8	18	43	126	148	121	149	0.88
6	18	0.00037	0.69	10.9	2.1	15	43	153	178	150	179	0.89
7	18	0.0052	9.5	7.3	0.8	17	44	184	208	180	208	0.89
8	18	0.0037	6.9	7.7	0.0	3	44	221	257	219	257	0.86
9	18	0.019	34	5.5	0.2	13	43	278	305	268	306	0.89
10	18	0.0095	18	6.4	0.0	15	44	339	365	335	365	0.85
11	18	0.34	6.2e+02	1.5	4.2	17	43	386	409	377	410	0.85
12	18	0.73	1.3e+03	0.4	8.4	6	29	404	427	400	439	0.71
13	18	0.0021	3.8	8.5	2.6	12	43	439	467	430	468	0.78
14	18	0.048	89	4.2	0.8	17	44	473	497	469	497	0.85
15	18	7.4	1.4e+04	-2.8	0.9	18	27	504	513	502	522	0.81
16	18	0.86	1.6e+03	0.2	0.3	19	43	535	556	531	557	0.72
17	18	4.7	8.7e+03	-2.2	1.3	12	27	558	573	551	579	0.67
18	18	4.5e-05	0.084	13.8	1.1	8	43	588	620	584	621	0.83

Sequence Information

Coding Sequence: ATGTCTCCAGAATACGTTTGTGATTACTGCACTCGCACATTTACAAGAAAGTACAACCTCCAAACCCACATAGAGAATTGCCATGTCAACTCCACATGTAACTGCGAGATCTGCGACCAACGATTCGGGAGCCCCGCTGGCCTGCAGCTACATCTCAGTAGAGGACATAACCGCTTCATGCAACCCTACCCCGAGTGCGATCTCTGCGGACGAATCTTCACTAGAAAACAAAATGTTGTGTCACACATGGTCACCGTGCATTTACAAGGCGTTGGTCCCCAGATAAAATGCAGAGTCTGCGGGAAGACATTCACGACGGAAAGGAACTTGAAGAGGCATATGAATCAGCTGCATAATCCTGATGTTCAGTGCCCTACTTGCGATTACTGTAAAAAAGCGTTTAAGGGAAAACATTCGCTGTTAGCTCACATACAGGCCACACACAACGTTTTAAAAGGAATTATCAAGTGTCATCTATGTGATAAAGTTTACACTAACAACAGAAATCTAAAGCGGCATATAGAAATGTATCACGGGGAAAAAGGGGAGTTTAGATGTACTCTATGTCCTAAAGTATACACATCGAATCAGAGCTTGCGTCGACACGCCAGAACTAGACATAATACTGACCAGGACAAGGACTCGATGGAACAAGACGACTATTACAACTACGATTTTAAAGTCCAGCTTCAAGAATTCAACTGTGAATATTGTGAACAGTTTTTCTCCGACGAACCGACTCTACGCCAGCACATAAAGTCTGGCCATCCTTTCAAAATATTCTATGAATATTGCCGAAATTCGCTACTCAAACAATCGGGGAAGAGGGAGAAGGAAAGGTTTTACAATTGCGAGACTTGCAATAACGTTTTTAACTCAGTTTACGAACTGAAGGACCATATGAAGACCAGCCACGATAGAGAATATTCTCTATCGACCTGTAATGTTTGCTTCTCAAAGTTCTACAGCAAAGAGACCATGTTTGAGCATAAAAAGATATGCCTCCCGCCGCCCAACGTCAACAACTGTAACTACTGCGATAAATTGTTCACAGACATCTCCAGCCTTGAGTTCCACATTAGAATATTCCACCCACAAGCGCAAATAGCTGATAACGATGTGTCCTCAACAAATCCTGACGAAACTGAGGCTGGTTATAAATGCCTCCACTGCGACAGGATGTACTACAGCGACCGCTCTTTAAAACATCACATAAAGCTCAAACACACCACAGACGAGGCTGTGGACTGTGGTATATGCGGGAAAATCTGCAATAACAAATATTACTTAGCTTCCCACATCAAAATCGTACACAACAACGATTCCTGGTCGAAATGTGACTACTGTGATAAACAATTCAAATCTAAAAGGAATATCCGACGTCACATCGAATATACGCACTTAGGCATGCAGAGATACAAATGTATAGAATGCGAGACGCTTTTCAAAGAAAAGAGGAGTCTTAGAAAGCACGTGCGCACAAAGCACCCCAACTCAACAGTGTTTCCCCAATGTCATATCTGTTATAAACGCTTCGAATCGGCCAAGTCTTGCAAGATTCACTTAAAACTCCTGCATTCGTTCAACATGAACACTTATCCATGTGATCTTTGTTCTGTATCGTTCAGCTCCAACGAAGCGCTGTCCATCCACCTCCAAACTAAACACTTAGCCAAAGACCAGATCTTCAAATGCGAGCCCTGCAACATCGTTTTCAATGGGCAGGACAAATTTGAACAACACAATGAACTCTACCACGTAACTCTCCCGATCAAGCAAAAGATATCACCACGCTGCATTCTATGCATGAAAGACTTCAGCACGCGAAAAACTTTAAAGCGACATATTAAGAAATTCCACGATGATTTCGATCCAGAGGAGCTAGCAACGTACGGTTCCAAGAAACGAATGTTCAACATAGACTGTGAGGAATGTGTTCAGAATTGCAACGACGACTTCTACTTGGATGTCTATCAAAAATTGAAGCATTTGAAAGACTCAATTGTCTTCAAATGCGAAAGCTGTTCGACCTCCTACAACTGCTTGGAATACTCTATACAGAGACATAAAGTGAGTAACGCGGAAACCAGTAACACTAAGATGATACTGAGCGAGCTGTGTACTGCTGAGATGAGTGATGCTTCCAACAGTGGGTGGGTAGCGTCGATGGAGGCTGAGAGTACGACGGGAGACTTGACTGTGAAGGAAGAACCGATGGAAGTGGATGACATAGACATGAAGACTGAGCCAGTGTCTCAGTGA
Protein Sequence: MSPEYVCDYCTRTFTRKYNLQTHIENCHVNSTCNCEICDQRFGSPAGLQLHLSRGHNRFMQPYPECDLCGRIFTRKQNVVSHMVTVHLQGVGPQIKCRVCGKTFTTERNLKRHMNQLHNPDVQCPTCDYCKKAFKGKHSLLAHIQATHNVLKGIIKCHLCDKVYTNNRNLKRHIEMYHGEKGEFRCTLCPKVYTSNQSLRRHARTRHNTDQDKDSMEQDDYYNYDFKVQLQEFNCEYCEQFFSDEPTLRQHIKSGHPFKIFYEYCRNSLLKQSGKREKERFYNCETCNNVFNSVYELKDHMKTSHDREYSLSTCNVCFSKFYSKETMFEHKKICLPPPNVNNCNYCDKLFTDISSLEFHIRIFHPQAQIADNDVSSTNPDETEAGYKCLHCDRMYYSDRSLKHHIKLKHTTDEAVDCGICGKICNNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAKDQIFKCEPCNIVFNGQDKFEQHNELYHVTLPIKQKISPRCILCMKDFSTRKTLKRHIKKFHDDFDPEELATYGSKKRMFNIDCEECVQNCNDDFYLDVYQKLKHLKDSIVFKCESCSTSYNCLEYSIQRHKVSNAETSNTKMILSELCTAEMSDASNSGWVASMEAESTTGDLTVKEEPMEVDDIDMKTEPVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680825;
90% Identity: iTF_01072763;
80% Identity: iTF_00660525;