Nudd051205.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991078.1:11316705-11318963[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4e-06 0.00046 22.1 4.1 1 23 5 28 5 28 0.95 2 19 0.00091 0.1 14.7 0.3 2 23 34 56 33 56 0.95 3 19 0.00011 0.013 17.5 0.2 2 23 65 87 65 87 0.96 4 19 8.9e-08 1e-05 27.3 1.4 2 23 96 118 95 118 0.95 5 19 0.00015 0.018 17.1 1.3 2 23 126 148 126 148 0.95 6 19 1.7e-06 0.00019 23.3 2.2 2 23 156 178 155 178 0.96 7 19 1e-05 0.0012 20.8 2.7 1 23 184 207 184 207 0.98 8 19 0.0011 0.13 14.4 0.2 3 23 236 257 234 257 0.96 9 19 9.7e-05 0.011 17.7 0.8 1 23 283 306 283 306 0.98 10 19 1.8 2.1e+02 4.3 1.0 2 21 314 333 313 334 0.92 11 19 0.0025 0.29 13.3 0.5 3 23 344 365 343 365 0.96 12 19 0.0078 0.9 11.7 5.9 1 23 386 409 386 409 0.97 13 19 5.7e-05 0.0065 18.5 0.7 3 23 417 438 416 438 0.97 14 19 0.00015 0.017 17.1 2.2 2 23 445 467 444 467 0.94 15 19 0.01 1.2 11.4 2.2 1 23 473 496 473 496 0.97 16 19 0.32 36 6.7 4.8 2 23 504 526 504 526 0.95 17 19 0.00037 0.042 15.9 0.5 1 23 533 556 533 556 0.97 18 19 0.46 53 6.2 0.6 1 22 563 584 563 586 0.89 19 19 0.024 2.7 10.2 2.7 3 23 599 620 598 620 0.91
Sequence Information
- Coding Sequence
- ATGTCTCAAGAATACGTCTGCGATTATTGCAGCCGTACTTTTACAAGGAAGTACAACCTTCAGACCCACATAGAGAACTGCCATATCAACTCAACATGCTACTGCGATATCTGCGACCAGCGGTTCGGGAGCCCAGCTGGTCTTCAGCTCCATCTCAGCCGAGGCCACAATCGCTTCATGCAGCCCTACCCAGAATGCGATCTCTGCGGACGAATCTTCACAAGAAAGCAAAACGTTGTCTCACACATGGTCACCGTCCATTTGCAAGGCGTCGGTCCACAGATACAATGCAAAGTCTGCGGGAAGACTTTCACCACGGAAAGGAACTTGAAACGACACATGAATCAGTTACATAATCCTGATGTTCAGTACCCTACATGCGACTATTGTAAGAAAGCTTTTAAAGGAAAGCATTCGTTGTTAGCTCATATACAAGCTACACACAACGTTTTAAAAGGAATAATAAAGTGTCATCTATGTGATAAAGTCTACACTAATAACAGGAATTTGAAGCGGCATATAGAAATGTATCACGGGGAGAAGGGGGAGTTTAAATGTACTTTATGTACTAAAGTATACACTTCCAACCAGAGTCTTCGACGTCACGCCAGGACTAGACATAATACAGACCAGGATAGAACTGAATCTTTGGAGCAAGATGAATATTATAACTtcgattttaaaatacagctaCAAGAGTCCAACTGTGACTATTGCGAACAATTCTTTCCTGACGAACCCACTTTACGTCAACATATTAAATCTGACCATCCTTTCAAAATGTTCTATGAATACTGCAGAAATTCGCTACTCAGACAAACTGGAAAGAGTGAGAAAGAGAGATTTTACAATTGCGAGAACTGCAATAACGTTTTTAACTCTGTCTACGAACTTAAAGATCACATGAAAACCAGTCATGATAGAGAATATTCTTTATCAACTTGCAACGTTTGCTTCTCAAAGTTCTACAGCAAAGAAACTATGTTTGAGCATAAGAAGATATGCCTCCCGCCGCCTAACGTGAACAACTGTAATTACTGTGACAAACTCTTCACAGATATCTCTAGCCTCGAGTTTCACATAAGAATCTTCCACCCGCAAGCACAAATAGACAACGATGTCTCATCAACGAACCCCGACGAAGCTGAGGCTGGTTTTAAATGCGTCCACTGCGACAGGATCTACTATAGCGACCGCTCTCTAAAACATCACATGAAGCTCAAGCACACGACGGACGAAGCTGTCGACTGTAACATATGCGGAAAAATCTGCAATAACAAGTATTACCTAGCTTCCCATATCAAAATCGTGCACAACAACGACTCCTGGTCGAAATGCGATTATTGCGAGAAGCAATTTAAATCAAAAAGGAATATCCGGCGGCACATAGAATACACACACTTGGGCATGCAACGGTATAAGTGTATAGAATGTGAGACTCTTTTCAAAGAAAAACGGAGTCTTAGAAAGCATGTCCGCACGAAGCATCCGAACTCGACAGTGTTTCCCCAATGCCATATCTGTTACAAACGCTTCGAATCTGCAAAGTCTtgcaaaatacatttaaaactgcTGCATTCGTTCAACATGAATACCCACCCGTGCGATCTCTGTTCGGTCTCATTCAGCTCCAATGAAGCGTTGTCCATCCACCTCCAAACTAAACACTTAGCTAAAGACCAGATCTTTAAATGCGAGCCATGTAACCTTGTCTTCAATGGGCAGGACAAATTTGAACAACACAACGAACTCTACCACGTCAGTCTGCCGATGAAGCAAAAGATATTACCTCGCTGCATCATATGCATGAAGGACTTCAGTACGCGAAAAACTTTAAAGCGTCATATTAAGAAATTCCACGATGACTTTGACCCGGAAGAACTAGCAACATACGGGTCTAAGAAGCGAATGTTCAACATAAATTGTGAAGAATGCATACAGAACTTCAACGATGATTTCTACTTAGATGTCTACCAAAagctcaaacatttaaaagacTCGGTAGTCTTTAAATGCGAAAGCTGTTCATCTTCATACAACTGCTTGGAGTATTCTATACAGAGACATAAAGATACTAACTTAGAGTCACATAAGACTAAGATGGTACTCAGCGAGTTGTGTACGGCTGTGATGAGTGATGCGTCCAACAGTGGGTGGGTTGAGTCGGTAGAGGCAGAGAGTACGACTGAAGACTTAAATGTAAAGGAGGAACCGATGGAGGTGGAAGATATAGTGAAGACTGAGCCTATGTCACCGTGA
- Protein Sequence
- MSQEYVCDYCSRTFTRKYNLQTHIENCHINSTCYCDICDQRFGSPAGLQLHLSRGHNRFMQPYPECDLCGRIFTRKQNVVSHMVTVHLQGVGPQIQCKVCGKTFTTERNLKRHMNQLHNPDVQYPTCDYCKKAFKGKHSLLAHIQATHNVLKGIIKCHLCDKVYTNNRNLKRHIEMYHGEKGEFKCTLCTKVYTSNQSLRRHARTRHNTDQDRTESLEQDEYYNFDFKIQLQESNCDYCEQFFPDEPTLRQHIKSDHPFKMFYEYCRNSLLRQTGKSEKERFYNCENCNNVFNSVYELKDHMKTSHDREYSLSTCNVCFSKFYSKETMFEHKKICLPPPNVNNCNYCDKLFTDISSLEFHIRIFHPQAQIDNDVSSTNPDEAEAGFKCVHCDRIYYSDRSLKHHMKLKHTTDEAVDCNICGKICNNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFSSNEALSIHLQTKHLAKDQIFKCEPCNLVFNGQDKFEQHNELYHVSLPMKQKILPRCIICMKDFSTRKTLKRHIKKFHDDFDPEELATYGSKKRMFNINCEECIQNFNDDFYLDVYQKLKHLKDSVVFKCESCSSSYNCLEYSIQRHKDTNLESHKTKMVLSELCTAVMSDASNSGWVESVEAESTTEDLNVKEEPMEVEDIVKTEPMSP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- iTF_01072763;
- 80% Identity
- iTF_01072763;