Pcas004876.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:18576269-18578593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.5e-06 0.0002 22.0 4.1 1 23 6 29 6 29 0.95 2 19 0.00077 0.044 14.7 0.3 2 23 35 57 34 57 0.95 3 19 1.4e-05 0.00078 20.1 0.1 2 23 66 88 66 88 0.97 4 19 1.5e-05 0.00087 20.0 1.6 2 23 97 119 96 119 0.95 5 19 1.4e-05 0.00079 20.1 1.7 2 23 127 149 127 149 0.95 6 19 7.1e-07 4e-05 24.2 2.2 2 23 157 179 156 179 0.96 7 19 2.8e-06 0.00016 22.3 1.3 1 23 185 208 185 208 0.98 8 19 0.00092 0.052 14.4 0.1 2 23 242 264 241 264 0.96 9 19 2.3e-05 0.0013 19.5 0.6 1 23 292 315 292 315 0.98 10 19 3.3 1.9e+02 3.2 1.8 2 21 323 342 322 343 0.92 11 19 0.0046 0.26 12.2 1.0 3 23 353 374 352 374 0.96 12 19 0.0014 0.079 13.9 6.5 1 23 399 422 399 422 0.97 13 19 7.4e-05 0.0042 17.8 0.3 2 23 429 451 428 451 0.96 14 19 0.00013 0.0074 17.1 2.2 2 23 458 480 457 480 0.94 15 19 0.0088 0.5 11.3 2.2 1 23 486 509 486 509 0.97 16 19 0.27 16 6.6 4.8 2 23 517 539 517 539 0.95 17 19 3.3e-05 0.0019 18.9 0.2 1 23 546 569 546 569 0.98 18 19 1.5 83 4.3 6.4 1 23 576 599 576 599 0.90 19 19 0.02 1.2 10.2 2.7 3 23 614 635 613 635 0.91
Sequence Information
- Coding Sequence
- ATGTCACCTTCCGAATATGTGTGCGACTATTGTAGTCGAACATTTACTAGAAAATATAATCTGCAAACACATATAGAAAATTGTCATATAAACTCGACATGTTACTGTGAAATTTGCGATCAAAGGTTTGGCAGTCCCGCCGGGTTGCAGCTGCATTTAAGTAGGGGTCATAATCGATTCCTACAGCCTTATCCAGAATGTGATATATGTGGCCGTATATTTACAAGAAAACAGAATGTTGTTTCACATATGATCACTGTCCATCTGCAAGGTAATGGGCCTCAGATACAGTGCTATATGTGCTACAAAACTTTCACAACCGAAAGGAATCTTAAGAGACATATTAACCAACTCCATAACCCTGATGTGGAATATCCCACTTGTGACCACTGTGGGAAAGTGTTCAAGGGCAAACACTCCTTAATTGCTCACATTCAAGCCACACACAACATTTTAAAGGGAATAATAAAGTGCCACTTGTGTGGAAAAGTGTACACAAATAACAGAAATTTGAAGAGGCATATTGAAATGTTTCATGGTGAAAAGGGAGAGTTTAGGTGTGATTTGTGTCCTAAAGTGTACACGTCGAATCAGAGTCTAAGACGGCACGCGAGGACTCGCCACAACACCGACCAGGACCTGTTCCGAGCCGAATCGATTATGGACTACCAGGAGCCGGCCGACTACTTTGCTGTCGATTACAAACCCCAAATAATAGAAATCCAATGCGAACTTTGTGATAAACGATTCGTGGAGGAACCCATGCTACGCCAGCACGTGAAGGTCGAGCATACCTTCAAGGACTTTTACGAATACTGTAAAAAATCGCTCATGAAACAAATGTCAGGTCAGACCgagaaaaataatgtattttacaaatgtgaaAACTGCAACAACGCTTTTAACACTGTGTACGAACTGAAGGATCACATGAGAGTGAATCACGACAGAGAGTATTCTCTCTCAACCTGTAACGTGTGCTTCAGTAAGTTTTACAGCAAGGAGACGATGCACGACCATAAAAAGATTTGCCTTCCTCCGACGAACGTAAACGCTTGCAGCCACTGTGACAAGTTGTTTACAGATATATCGAGCCTCGAATTTCACATCAGAATCTTCCACCCTCAAGCTCACATCGCCGATCCTGACGTAACTTCCACAAATGTTGAAGACTTGTCTACTGACGGCAGCACGTTCAAATGTGAACACTGTAATCGCATGTACTACAGCGAGAGGTCTCTGAAACACCATATTAAACTGAAACACACCACCGACGAGGCCGTCGAATGTGGCCTCTGCGGCAAAATATGCAGCAACAAGTATTACTTAGCTTCCCATATCAAAATAGTCCACAACAATGACTCCTGGTCGAAATGCGACTATTGCGAGAAACAGTTCAAGTCGAAGCGAAACATCCGAAGACATATCGAATATACACATTTGGGTATGCAAAGATACAAGTGCATAGAGTGCGAGACTCTATTCAAGGAGAAGAGAAGTTTACGAAAACATGTCAGGACAAAGCATCCAAACTCTACAATATTTCCCCAATGTCATATTTGCTACAAGAGATTTGAATCTGCAAAATCTTGTAAGATTCATTTGAAATTGTTGCACTCGTTCAACATGAATACGTACCCGTGCGACCTTTGCTCGGTCTCCTTCAGTTCCAATGAAGCTTTGAACATACACCTTAAGACAAAACATTTAGCTGAAGATCAGATCTTTAAATGCGAACAGTGTAATTTGGTTTTCAACGGGCACGAGAAGTTTGAACACCACAACGAGAATTGCCACGTGAATTTGATTTTCAACATGAAGCAGAAGGTGCTGCCTCGCTGCATTATTTGTATGAAAGACTTTAGCACCCGGAAGACTCTTAAGCGTCACATAAAGAAATTTCACGACGATTTTGACGCGGAAGAACTCGCCACCTACGGTTCGAGGAAGCGAATATTTAACGTCGAATGTGAGGATTGCATTAAGAACTTCAATgacgaattttattttgacgtttATCAGAAATTGAAACATTTGAAGGATTCGGTGGTGTTCAAATGTGAGAGGTGTGCCTGTTCTTACGATTGCCTGGAATATTCCATACAAAGGTATAAAGTGACAAATTTTGAACTATGCAAGAGTAAAATGATTTTGAGTGAGCTTTGTACAGCTGAGATGAGTGACGACGAGGCCTCCAATAGCGGTTTTGGTTTTGGTTTCGAGTGCATGGAGGCAGAGAGTACAACAGAGGACATCCAAATCAAAACAGAACCTCTTGAGTTGATGGATGTAGACTTAGTTAAAGCGGAGCCTACGTCGCCATAA
- Protein Sequence
- MSPSEYVCDYCSRTFTRKYNLQTHIENCHINSTCYCEICDQRFGSPAGLQLHLSRGHNRFLQPYPECDICGRIFTRKQNVVSHMITVHLQGNGPQIQCYMCYKTFTTERNLKRHINQLHNPDVEYPTCDHCGKVFKGKHSLIAHIQATHNILKGIIKCHLCGKVYTNNRNLKRHIEMFHGEKGEFRCDLCPKVYTSNQSLRRHARTRHNTDQDLFRAESIMDYQEPADYFAVDYKPQIIEIQCELCDKRFVEEPMLRQHVKVEHTFKDFYEYCKKSLMKQMSGQTEKNNVFYKCENCNNAFNTVYELKDHMRVNHDREYSLSTCNVCFSKFYSKETMHDHKKICLPPTNVNACSHCDKLFTDISSLEFHIRIFHPQAHIADPDVTSTNVEDLSTDGSTFKCEHCNRMYYSERSLKHHIKLKHTTDEAVECGLCGKICSNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTIFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALNIHLKTKHLAEDQIFKCEQCNLVFNGHEKFEHHNENCHVNLIFNMKQKVLPRCIICMKDFSTRKTLKRHIKKFHDDFDAEELATYGSRKRIFNVECEDCIKNFNDEFYFDVYQKLKHLKDSVVFKCERCACSYDCLEYSIQRYKVTNFELCKSKMILSELCTAEMSDDEASNSGFGFGFECMEAESTTEDIQIKTEPLELMDVDLVKAEPTSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- -
- 80% Identity
- -