Dalb018069.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dasysyrphus albostriatus
Gene Symbol
-
Assembly
GCA_946251825.1
Location
CAMIUB010000223.1:95744-104690[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4e-05 0.0059 18.0 2.1 1 23 403 425 403 425 0.96
2 18 1e-05 0.0015 19.8 0.4 1 23 431 453 431 453 0.97
3 18 2e-05 0.003 18.9 0.5 1 23 459 481 459 481 0.98
4 18 1.7e-05 0.0025 19.2 3.1 1 23 487 509 487 509 0.97
5 18 3.8e-05 0.0057 18.0 4.7 1 23 515 537 515 537 0.99
6 18 7e-05 0.01 17.2 5.7 1 23 543 565 543 565 0.97
7 18 1.9e-07 2.9e-05 25.3 4.3 1 23 571 593 571 593 0.98
8 18 1.2e-07 1.8e-05 25.9 2.4 1 23 599 621 599 621 0.97
9 18 0.00016 0.025 16.0 5.7 1 23 627 649 627 649 0.97
10 18 2.1e-05 0.0031 18.9 6.5 1 23 655 677 655 677 0.98
11 18 3.5e-06 0.00052 21.3 4.5 1 23 683 705 683 705 0.98
12 18 8.1e-06 0.0012 20.2 8.1 1 23 711 733 711 733 0.98
13 18 2e-06 0.00029 22.1 7.9 1 23 739 761 739 761 0.98
14 18 7.3e-07 0.00011 23.4 7.7 1 23 767 789 767 789 0.98
15 18 0.00023 0.034 15.6 9.5 1 23 795 818 795 818 0.95
16 18 0.00019 0.029 15.8 0.5 1 23 824 846 824 846 0.97
17 18 0.00087 0.13 13.8 4.4 1 23 856 878 856 878 0.98
18 18 7.2e-06 0.0011 20.3 1.7 1 23 884 907 884 907 0.96

Sequence Information

Coding Sequence
ATGTTACAGCAACATGTCCAGCAACACCATCATGAAAATCCTGCTGGCGGTATTAGTGGAGTTATTCATCCTGTTGGCGGGATCGAGTCAGACGTATCAAAACAACAACATCCACACCATCAGCCATCTCACGTATCTGGTCCCCAACAACATCTTGGAAAATACTGGGTTGTTACGAATCTTTTTCAGGGTCCCGGCCAGCCGCCATACAATATTGGTgtaacaccaacaacttcagcagttccttcgataccgcctccgatatcatcgcattctagcgcttcggcagcaaaagcagcaaactccaagcagcaacagcagcagcaagatcaacaacagcaactaGCATCAAACTCGCACACTCAATCGCCATCAGCACATATAGTTTCATCTGTTGGTGCTACATCGCTACAAATACCCAATCCAATGATTAATACAGGAATGAACCAGCACCAGCTTCCCAATGGTACAATTATCGCAGGCCCACGTCATCCGGATTCCTTACACGTTCATGGAACAATGTCCGGTGACGACAATCGACACGTCCCACACGGTATGCAGGACATTAAGGAGGAGAAACCTTTTGCCAATGGCAAGCCGAACTTACATATGGCACATGTCAATCCAGCATCTTCCCTTTCATCAAAAATGAATCCTGGCAGTGGGGGCAACGGAGGAAACAATGGCCAATCAACTGAACCAGGTGGTAGCCAAATGGTCAAACTACAGCCAGGGTCTGTCCCTGGTACCGGTAGTAGCGGAGGAGGAAACGACCAAGAAAGCAAACCACCCCACGGTGTTGAAATGTATAAGGTCAATATTGAAGACTTGAGTCAATTTTTATCATATCACGAAGTCTTTGGTAAGATCCACGGGGAAGTAATAAATCAACAGCAAATATCGCACACGGTAACTCATCCTACTACAAATGTATCGACTGCAAATGCTGGCGGAAACACCTCAGTGAGTGGTTCTGTTTCCGGTTCACTACCTCCACCACCGTCGACTAATGGAAACTCGATAGTGTCTACCAATAGCCTAACCAGCTCAGGAACTGGTGCCCAAGCTGTTCCGCCGACAGGTGCAGCTGGTGTGTCTACTGCACCTGGTGAACTAATCCTACCTAAGATGGAAAATCAAGGAATGGGTGTTGATCAGAACACCCCACTGCTGGCACCGGACGGAACACCCATCATGGGTGGCACGCACATCTGTGACATTTGCGGCAAAATGTTCCAATTTCGTTATCAGCTAATTGTACACCGTCGTTATCACAGTGAACGCAAGCCATTTAATTGTCAGGTTTGCGGGCAGGGATTCACCACATCGCAAGATCTCACACGACATGGTAAGATTCACATTGGTGGGCCAATGTTCACGTGTGTGATTTGCTTCAATGTGTTTGCCAATAACGCCAGCTTGGAGCGGCATATGAAACGCCATTCAACGGACAAACCTTTTGCATGTACCATATGCCAGAAAACATTTGCCCGCAAAGAGCACCTGGACAACCACTTTCGCAGCCATACTGGTGAGACACCGTTTCGTTGCCAGTATTGTGCAAAAACGTTTACACGAAAAGAACACATGGTGAATCATGTGCGCAAGCATACCGGAGAAACGCCACATCGTTGCGATATCTGTAAAAAATCTTTTACGAGGAAAGAACACTATGTTAATCATTACATGTGGCACACAGGTCAGACACCGCATCAGTGCGATATATGTGGCAAGAAATATACAAGAAAAGAACACCTAGCCAATCATATGCGATCACATACGAATGATACACCATTCCGGTGTGAGATTTGTGGCAAGAGTTTTAGCAGAAAAGAACATTTTACCAATCACATTTTATGGCATACAGGAGAAACCCCTCATCGCTGTGATTTTTGTGCGAAGACGTTCACCAGGAAGGAGCACCTATTGAACCATGTCCGCCAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAAACTCCCTTCAAGTGCACCTACTGTACCAAGGCTTTCACAAGGAAGGATCATATGGTAAATCATATCCGTCAACATACTGGAGAATCACCACATAAATGCACCTACTGCACGAAAACCTTCACACGGAAGGAACATCTGACCAACCATGTGCGCCAACATACGGGTGAATCACCACACCGTTGCACCTACTGCAAAAAAACGTTTACACGCAAGGAACATCTAACCAATCACATCCGGTTGCACACAGGCGATTCGCCTCACAAATGCGAATACTGCCAAAAGACGTTCACACGTAAAGAGCATCTGAACAATCATATGCGGCAGCATTCGAGTGATAATCCGCACTGCTGCAATGTTTGCAACAAGCCGTTTACACGCAAGGAACATCTAATAAATCATATGTCGCGATGTCATACCGGCGATCGACCATTTGCTTGTGAGACTTGTGGTAAAAGTTTTCCCCTTAAAGGCAACTTGCTCTTCCATCAACGCAGCCACACCAAAGGTCAGGAGTGTGAACGTCCATTTTCTTGCGAAAAATGCCCGAAAAATTTCATTTGCAAAGGTCATTTGGTGTCGCACATGCGATCTCATTCTGGAGAAAAGCCTCATGCTTGCACCATGTGCAGCAAAGCATTTGTGGAAAGAGGAAATCTCAAGCGACACATGAAGATGAATCACCCGGATGCTGTAATGCCACCACCTCCAACACCTTTACCCGGGCTTCTGACTCAAATCAAACAAGAAATCAAGCCGATTATAATTCCCCATCAACCCCCAACTATGCATACGATACAACAAATCACTTCAACTGCAGGCAGCGCAAGTGCAAATAATCCTGTCAATCCCGCCCTTTTGGCACCTGGTCTGGTTccaatggttacatctacaataacttcacacataaagcagcaatcccacttacaacaacagcaacaacagcaccaacatcaacatcaactgcaacaacagcaacaacaacttttgcagctgtccattcagcaacaacaacagcaacaacctcaaccgccttcagtgccgttagctctcattggagccgacccctcagctatagctCGGGCTGCTATGCAACTACAACATTTGCCAACCAACGTTGAACAACACCCAGTGGTGTATTAG
Protein Sequence
MLQQHVQQHHHENPAGGISGVIHPVGGIESDVSKQQHPHHQPSHVSGPQQHLGKYWVVTNLFQGPGQPPYNIGVTPTTSAVPSIPPPISSHSSASAAKAANSKQQQQQQDQQQQLASNSHTQSPSAHIVSSVGATSLQIPNPMINTGMNQHQLPNGTIIAGPRHPDSLHVHGTMSGDDNRHVPHGMQDIKEEKPFANGKPNLHMAHVNPASSLSSKMNPGSGGNGGNNGQSTEPGGSQMVKLQPGSVPGTGSSGGGNDQESKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISHTVTHPTTNVSTANAGGNTSVSGSVSGSLPPPPSTNGNSIVSTNSLTSSGTGAQAVPPTGAAGVSTAPGELILPKMENQGMGVDQNTPLLAPDGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPLPGLLTQIKQEIKPIIIPHQPPTMHTIQQITSTAGSASANNPVNPALLAPGLVPMVTSTITSHIKQQSHLQQQQQQHQHQHQLQQQQQQLLQLSIQQQQQQQPQPPSVPLALIGADPSAIARAAMQLQHLPTNVEQHPVVY