Basic Information

Insect: Criorhina ranunculi
Gene Symbol: -
Assembly: GCA_951813785.1
Location: OX638383.1:41804440-41814324[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.9e-05 0.0038 17.9 2.1 1 23 417 439 417 439 0.96

2 18 1e-05 0.00099 19.7 0.4 1 23 445 467 445 467 0.97

3 18 1.9e-05 0.0019 18.8 0.5 1 23 473 495 473 495 0.98

4 18 1.6e-05 0.0016 19.1 3.1 1 23 501 523 501 523 0.97

5 18 3.7e-05 0.0037 17.9 4.7 1 23 529 551 529 551 0.99

6 18 6.8e-05 0.0068 17.1 5.7 1 23 557 579 557 579 0.97

7 18 1.9e-07 1.9e-05 25.2 4.3 1 23 585 607 585 607 0.98

8 18 1.2e-07 1.2e-05 25.8 2.4 1 23 613 635 613 635 0.97

9 18 0.00016 0.016 16.0 5.7 1 23 641 663 641 663 0.97

10 18 2e-05 0.002 18.8 6.5 1 23 669 691 669 691 0.98

11 18 3.4e-06 0.00034 21.2 4.5 1 23 697 719 697 719 0.98

12 18 7.8e-06 0.00078 20.1 8.1 1 23 725 747 725 747 0.98

13 18 1.9e-06 0.00019 22.0 7.9 1 23 753 775 753 775 0.98

14 18 7.1e-07 7.1e-05 23.4 7.7 1 23 781 803 781 803 0.98

15 18 0.00022 0.022 15.5 9.5 1 23 809 832 809 832 0.95

16 18 0.00011 0.011 16.4 0.4 1 23 838 860 838 860 0.97

17 18 0.00084 0.084 13.7 4.4 1 23 870 892 870 892 0.98

18 18 7e-06 0.00069 20.2 1.7 1 23 898 921 898 921 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.9e-05	0.0038	17.9	2.1	1	23	417	439	417	439	0.96
2	18	1e-05	0.00099	19.7	0.4	1	23	445	467	445	467	0.97
3	18	1.9e-05	0.0019	18.8	0.5	1	23	473	495	473	495	0.98
4	18	1.6e-05	0.0016	19.1	3.1	1	23	501	523	501	523	0.97
5	18	3.7e-05	0.0037	17.9	4.7	1	23	529	551	529	551	0.99
6	18	6.8e-05	0.0068	17.1	5.7	1	23	557	579	557	579	0.97
7	18	1.9e-07	1.9e-05	25.2	4.3	1	23	585	607	585	607	0.98
8	18	1.2e-07	1.2e-05	25.8	2.4	1	23	613	635	613	635	0.97
9	18	0.00016	0.016	16.0	5.7	1	23	641	663	641	663	0.97
10	18	2e-05	0.002	18.8	6.5	1	23	669	691	669	691	0.98
11	18	3.4e-06	0.00034	21.2	4.5	1	23	697	719	697	719	0.98
12	18	7.8e-06	0.00078	20.1	8.1	1	23	725	747	725	747	0.98
13	18	1.9e-06	0.00019	22.0	7.9	1	23	753	775	753	775	0.98
14	18	7.1e-07	7.1e-05	23.4	7.7	1	23	781	803	781	803	0.98
15	18	0.00022	0.022	15.5	9.5	1	23	809	832	809	832	0.95
16	18	0.00011	0.011	16.4	0.4	1	23	838	860	838	860	0.97
17	18	0.00084	0.084	13.7	4.4	1	23	870	892	870	892	0.98
18	18	7e-06	0.00069	20.2	1.7	1	23	898	921	898	921	0.96

Sequence Information

Coding Sequence: ATGAATTCGGATCATACAACAGCTCCTGGCGAGCCGTCATCAAATCCGAATGACTCTCAACAAAGTCGACATTCGCCACAGCAGgctcagcaacaacagcagcagcaacaccatcaacatcaacaacagcagcagcagcaacaacaacagctcgCTCACCAGCGACATCCCCAACAATTAAATGAActTGGAAAGTACTGGGTTGTTACGAATCTATTTCAGGGTCCAGGCCAACCGCCATACAATATTGGTGTAACACCAACAACCTCAGCAGTTCCTACATTACCGCCTCCAATATCATCCCATTCAAGCGCCTCAGGAGCAAAATCAGGAAATTCTAAGCAACAACAGCAAGATCAACTAGCACCTAACTCGCACACACAGACACCAGCACATATAGTATCATCGGTTGGTGCAACTTCCTTACAAATACCCAATCCAATGATAACAAATGCAGCGATGAATCAGCAACAGCTTCCAAATGGGACGATTATTGCAGCCCCACGACATCCGGATTCTTTGCACGTCCATGGAACGATGTCCTCCGACGACAATCGACACGTCTCACACGGTATGCAAGACATAAAGGAGGAGAAACCTTTCGCGAATGGCAAGCAAAATAATCACATGGCTCATGTTAATCCAGCATCTTCCGTTTCGTCGAAAATGAATTCTGGCAGTGGTGGCAACAATGTGCAATCAGCCGAACCAGGTAGTGGTGGTGGCGGACAAATGGTTAACAAATTGCAAGGCGGAGGTGTTCCGGTTGGAACCGGTGCAGGCGGTGGCGGAGGCAATGAACAGCAAGAGCTGGTTAGTGGTAAACCGCCACACGGTGTTGAAATGTACAAAGTCAATATTGAAGATTTGAGTCAATTTCTATCATATCACGAGGTCTTTGGCAAGATCCATGGCGAAGTAATAAATCAACAGCAAATATCATCGCACACGGTAACGCATCCTACTACGAATGTATCAACCTCAAATGCTGGTGGCAATACCTCTGTGAGTGGTACTGTTACTGGTTCACTACCTCCACCTCCGCCACCGTCGACTAATGGCAATTCGATAGTGACAACCAACAGCCTTACCAGTTCAGGGACTGGTGCACAAGCAGTACCTCCGCCAGTCGGTGGTCCAACTGTTCCCGGAGATCTTATACTGCCTAAAATGGAGAATCAAGGGATGGGTGTAGATCAGACTACCCCTCTGCTGGCACCGGATGGAACGCCTATAATGGGCGGTACGCATATCTGTGACATTTGCGGCAAAATGTTCCAATTTCGCTATCAACTAATTGTACATCGTCGCTATCATAGCGAACGTAAGCCATTTAATTGCCAAGTATGTGGACAGGGATTTACAACGTCGCAAGATCTCACCCGCCACGGTAAGATCCATATTGGTGGGCCAATGTTCACATGTGTCATTTGCTTCAATGTGTTCGCCAACAACGCCAGCCTGGAGCGGCATATGAAACGTCATTCAACCGACAAGCCATTCGCGTGCACCATATGCCAGAAGACATTTGCCCGCAAAGAGCACTTGGACAACCACTTTCGCAGTCATACGGGTGAGACGCCATTCCGTTGTCAGTATTGTGCGAAAACGTTTACGCGAAAGGAGCACATGGTGAATCATGTGCGCAAGCATACCGGAGAGACGCCGCATCGTTGCGATATTTGTAAGAAATCTTTTACGCGGAAAGAGCACTATGTAAACCATTACATGTGGCATACAGGTCAAACACCGCATCAATGCGATATATGTGGGAAGAAGTATACGAGGAAGGAACACCTAGCCAATCATATGAGGTCCCATACGAACGATACACCATTCCGGTGTGAGATATGTGGCAAGAGTTTTAGCAGAAAGGAACACTTTACCAATCACATTTTATGGCATACAgGAGAAACCCCTCATCGCTGTGATTTCTGTGCGAAGACGTTCACAAGGAAGGAGCACCTATTGAATCATGTCCGCCAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAGACCCCCTTCAAGTGCACCTACTGTACCAAGGCGTTTACTCGAAAGGATCACATGGTTAATCATATCCGTCAACATACCGGAGAGTCACCACATAAATGCACCTATTGCACGAAAACCTTTACAAGGAAAGAACATCTGACCAATCATGTGCGCCAACATACGGGTGAGTCGCCTCATCGTTGCACCTACtgcaaaaaaacatttacacgCAAGGAACACCTAACAAATCACATCCGGTTGCATACAGGCGATTCGCCCCACAAATGCGAATACTGCCAAAAGACGTTCACACGAAAGGAGCACTTGAACAACCATATGCGACAGCACTCGAGTGACAACCCACACTGCTGTAATGTGTGCAACAAGCCGTTCACACGTAAGGAGCATTTGATCAATCATATGTCGCGCTGTCACACTGGAGATCGACCGTTTGCATGTGAAACATGCGgcaaaagttttcctttaaaaGGCAATTTGATCTTCCATCAACGTAGTCACACCAAAGGTCAAGAGTGTGAACGTCCATTTTCGTGCGAGAAGTGTCCGAAGAACTTCATTTGCAAAGGTCATCTGGTATCACATATGCGTTCACATTCAGGTGAGAAACCCCATGCATGCACTATGTGCAGCAAGGCATTTGTGGAGAGAGGGAATCTTAAACGGCACATGAAAATGAATCATCCTGATGCAGTTATGCCGCCGCCTCCAACACCGCTTCCGGGTATTTTAACGCAAATCAAACAGGAGATTAATCCGATAATAAttccTCATCAACCACCAACAATGCACACAATACAGCAAATTACTTCAACTGCAGGCAGCTCAAGTGCAAATAATCCAGTAAATCCAGCCCTTTTGGCGCCTGGTCTTGTACCAATGGTAACATCTACAATAACTTCACATATTAGTCAAAAGCAGCAATcccatcaacagcaacagcagcagcaacaccaacatcaacaacaattgcaacagcaacaacaacagctatTGCAATTATCCATTCAACAGGCAGCTCAACATCAGCAGGCTGCTGAACAtcgacagcaacaacaacaacaacagcagcaacaacatcagcaacaacaacaaagccatcagcaacatcaacagcaacagcagcagcagcagcaacaacagcaagtTCAGCAACAATCACAACAGCATCAACAGCCACAACCGCCATCAGTGCCGATAGCTCTAATTGGAGCGGATCCCTCAGCGATAGCACGCGCTGCTATGCAATTACAACATTTGCCAACGAATGTCGAACAACATCCAGTGGTGTACTAG
Protein Sequence: MNSDHTTAPGEPSSNPNDSQQSRHSPQQAQQQQQQQHHQHQQQQQQQQQQLAHQRHPQQLNELGKYWVVTNLFQGPGQPPYNIGVTPTTSAVPTLPPPISSHSSASGAKSGNSKQQQQDQLAPNSHTQTPAHIVSSVGATSLQIPNPMITNAAMNQQQLPNGTIIAAPRHPDSLHVHGTMSSDDNRHVSHGMQDIKEEKPFANGKQNNHMAHVNPASSVSSKMNSGSGGNNVQSAEPGSGGGGQMVNKLQGGGVPVGTGAGGGGGNEQQELVSGKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISSHTVTHPTTNVSTSNAGGNTSVSGTVTGSLPPPPPPSTNGNSIVTTNSLTSSGTGAQAVPPPVGGPTVPGDLILPKMENQGMGVDQTTPLLAPDGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLIFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPLPGILTQIKQEINPIIIPHQPPTMHTIQQITSTAGSSSANNPVNPALLAPGLVPMVTSTITSHISQKQQSHQQQQQQQHQHQQQLQQQQQQLLQLSIQQAAQHQQAAEHRQQQQQQQQQQHQQQQQSHQQHQQQQQQQQQQQQVQQQSQQHQQPQPPSVPIALIGADPSAIARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00426545;
90% Identity: iTF_00991990;
80% Identity: -