Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000329.1:548190-560297[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.8e-05 0.008 17.8 2.1 1 23 466 488 466 488 0.96

2 18 1.2e-05 0.0021 19.7 0.4 1 23 494 516 494 516 0.97

3 18 2.4e-05 0.004 18.8 0.5 1 23 522 544 522 544 0.98

4 18 2e-05 0.0034 19.0 3.1 1 23 550 572 550 572 0.97

5 18 4.6e-05 0.0077 17.9 4.7 1 23 578 600 578 600 0.99

6 18 8.4e-05 0.014 17.0 5.7 1 23 606 628 606 628 0.97

7 18 2.3e-07 3.9e-05 25.1 4.3 1 23 634 656 634 656 0.98

8 18 1.5e-07 2.5e-05 25.7 2.4 1 23 662 684 662 684 0.97

9 18 0.0002 0.033 15.9 5.7 1 23 690 712 690 712 0.97

10 18 2.5e-05 0.0041 18.7 6.5 1 23 718 740 718 740 0.98

11 18 4.2e-06 0.0007 21.1 4.5 1 23 746 768 746 768 0.98

12 18 9.7e-06 0.0016 20.0 8.1 1 23 774 796 774 796 0.98

13 18 2.4e-06 0.0004 21.9 7.9 1 23 802 824 802 824 0.98

14 18 8.8e-07 0.00015 23.3 7.7 1 23 830 852 830 852 0.98

15 18 0.00028 0.046 15.4 9.5 1 23 858 881 858 881 0.95

16 18 0.00023 0.039 15.7 0.5 1 23 887 909 887 909 0.97

17 18 0.001 0.17 13.6 4.4 1 23 919 941 919 941 0.98

18 18 8.6e-06 0.0014 20.2 1.7 1 23 947 970 947 970 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.8e-05	0.008	17.8	2.1	1	23	466	488	466	488	0.96
2	18	1.2e-05	0.0021	19.7	0.4	1	23	494	516	494	516	0.97
3	18	2.4e-05	0.004	18.8	0.5	1	23	522	544	522	544	0.98
4	18	2e-05	0.0034	19.0	3.1	1	23	550	572	550	572	0.97
5	18	4.6e-05	0.0077	17.9	4.7	1	23	578	600	578	600	0.99
6	18	8.4e-05	0.014	17.0	5.7	1	23	606	628	606	628	0.97
7	18	2.3e-07	3.9e-05	25.1	4.3	1	23	634	656	634	656	0.98
8	18	1.5e-07	2.5e-05	25.7	2.4	1	23	662	684	662	684	0.97
9	18	0.0002	0.033	15.9	5.7	1	23	690	712	690	712	0.97
10	18	2.5e-05	0.0041	18.7	6.5	1	23	718	740	718	740	0.98
11	18	4.2e-06	0.0007	21.1	4.5	1	23	746	768	746	768	0.98
12	18	9.7e-06	0.0016	20.0	8.1	1	23	774	796	774	796	0.98
13	18	2.4e-06	0.0004	21.9	7.9	1	23	802	824	802	824	0.98
14	18	8.8e-07	0.00015	23.3	7.7	1	23	830	852	830	852	0.98
15	18	0.00028	0.046	15.4	9.5	1	23	858	881	858	881	0.95
16	18	0.00023	0.039	15.7	0.5	1	23	887	909	887	909	0.97
17	18	0.001	0.17	13.6	4.4	1	23	919	941	919	941	0.98
18	18	8.6e-06	0.0014	20.2	1.7	1	23	947	970	947	970	0.96

Sequence Information

Coding Sequence: ATGAATTCGGATCATACAGCAGCTCCTGGCGAGTCGTCATCAAATCCGAATGACTCTCAACAAAGTCGGCATTCGCCGCAGCAGgtccagcagcaacaacaacagcagcagcatcatcagcagcatcaacaacaacaacaacagcagcagcagcaacaacaacaacaacaacaactcacTCACCAGCGCCATCCGCAACAATTGAATGAACAACATGtccagcaacagcaacatcacGAAAACCCTGGTATGGTCGGAGTTATTCAGCCTGTTGGCGGGATCGATTCAGATGTATccaaacagcaacaacagccacAGCAGCATCAACTACAACAACTTCACCAACATCAGCCATCGCTGGTCTCAGGTGCCCCACATCTTGGAAAGTACTGGGTTGTCACGAATCTATTCCAAGGACCAGGTCAGCCGCCATACAATATTGGTGTAACGCCAACAACCTCAGCAGTTCCTACACTACCGCCTCCAATATCATCTCATTCAAGCGCCTCAGGACCAAAATCAGGAAACTCAAAACAACAGCAAGATCAACAACTAGCTCCAAACTCGCACACACAATCACCAGCACACATAGTCTCATCCGTCGGTGCAACGTCTCTCCAAATACCCAATCCAATGATTTCGAACGCCTCATTGAATCAGCAGCAGCTTCCGAATGGCACAATTATTGCCGGACCACGTCATCCGGATTCCCTACACGTCCATGGAACGATGTCCTCCGACGACAATCGACACGTCTCACACGGTATGCAAGACATAAAGGAGGAGAAACCTTTTATAAACGGCAAGCAAAACAATCACATGGCTCATGTCAATCCAGCATCTTCCGTTTCGTCGAAAATGAATTCTGGCAATGGTGGCAATAATCCACAATCGGCCGAACCAGTTGGCGGTGTACAAATGGTTAATAAACTGCAAGCGGGCGGTGAACAACAAGAGCTAGGCACCGGTAAACCGCCACATGGCGTCGAAATGTACAAAGTCAATATCGAAGATTTGAGTCAATTTCTATCATATCACGAGGTCTTTGGCAAGATCCATGGCGAAGTAAtaaatcaacaacaaatatcatcGCACACGGTAACGCATCCTACTACAAATGTATCAACCTCAAATGCTGGTGGCAATACCTCTGTGAGTGGTACTGTTACTGGTTCACTACCTCCACCCCCGCCACCGTCGACTAATGGCAATTCGATAGTGACAACCAACAGCCTTACCAGTTCAGGGACTGGTGCGCAAACAGCTGCGCCGCCAGGTGGTGTACCCACAGCCACCGGCGATCTATTAATGCCCAAAATGGAGAATCAAGGTATGGGCGTCGATCAGAATACCCCACTGTTGGCACCTGACGGCACCCCCATAATGGGTGGTACGCATATCTGTGACATTTGCGGCAAAATGTTTCAATTTCGCTATCAACTAATTGTACATCGTCGCTACCACAGTGAACGTAAGCCATTCAATTGCCAAGTATGCGGACAGGGATTTACAACGTCACAAGATCTCACCCGTCACGGCAAGATCCACATTGGTGGGCCAATGTTCACGTGTGTCATCTGCTTCAATGTGTTTGCCAACAACGCCAGTCTGGAACGGCATATGAAACGACACTCGACCGATAAGCCATTCGCGTGCACCATATGCCAGAAGACATTTGCCCGCAAAGAGCATTTGGACAACCATTTTCGCAGTCATACGGGCGAGACGCCATTCCGTTGTCAGTATTGTGCGAAAACGTTCACGCGAAAGGAGCACATGGTGAATCATGTGCGCAAGCATACCGGAGAGACGCCGCATCGTTgcgatatttgtaagaaatcttTTACGCGGAAAGAGCACTATGTAAACCATTACATGTGGCATACAGGTCAGACGCCGCACCAATGTGACATTTGTGGGAAGAAGTACACTCGGAAGGAACATCTAGCCAATCATATGCGCTCCCATACGAACGATACACCATTCCGGTGTGAGATATGTGGCAAGAGTTTCAGCAGAAAGGAGCACTTCACCAACCACATTCTATGGCATACAGGAGAAACCCCTCATCGCTGTGATTTCTGTGCGAAGACGTTTACCAGGAAGGAGCATCTATTAAACCATGTCCGCCAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAAACCCCCTTCAAGTGCACCTACTGTACTAAGGCGTTTACACGAAAGGATCACATGGTGAATCACATCCGTCAACATACCGGAGAGTCTCCGCATAAATGCACCTACTGCACGAAAACCTTTACAAGGAAAGAACATCTGACCAATCATGTGCGCCAACATACGGGTGAGTCGCCTCATCGTTGCACCTACTGCAAAAAAACATTTACACGCAAGGAACACCTAACGAATCACATCCGGTTGCATACAGGCGATTCGCCCCACAAATGCGAATACTGCCAAAAGACGTTCACACGCAAGGAGCATTTGAACAACCATATGCGACAACACTCGAGTGACAATCCGCATTGCTGTAATGTGTGCAACAAACCGTTTACACGCAAGGAACACTTGATCAATCATATGTCACGCTGTCATACAGGTGATCGGCCGTTTGCCTGTGAAACATGCGGAAAGAGTTTTCCACTAAAAGGTAACTTGCTCTTCCATCAGCGCAGTCACACCAAAGGCCAAGAGTGTGAGCGTCCGTTTTCGTGCGAGAAGTGCCCGAAGAACTTCATTTGCAAAGGTCATCTGGTGTCGCATATGCGTTCGCATTCAGGTGAGAAACCACATGCCTGCACAATGTGCAGTAAGGCATTTGTGGAGAGAGGGAACCTCAAGCGTCACATGAAGATGAATCATCCCGATGCAGTTATGCCACCGCCACCGACACCAATTCCGGGTATTTTGACGCAAATCAAACAGGAAATCAATCCCATAATAATTCCTCATCAACCTCCAACCATGCACACGATACAGCAAATCACTTCAACTGCAGGCAGCTCAAGTGCAACAAATCCAGTAAATCCAGCGCTTCTGGCACCTGGTCTTGTACCAATGGTAACATCTACAATAACTTCACACCTTAATCCAAAGCAGCAATCccatcaacagcagcagcaacagcaacaacaccaACATCAACAGCAgttgcagcaacagcagcagcagcaacaacagctttTACAGCTCTCCATTCAGCAGGCGGCTCAACATCAGCAGGCTGAACATcggcagcaacaacagcaacaacaacaacagcagcagcaacagcatcaacagcagcaacaacaacaaagtcatcaacaacaccaacaacaacagcagcaacaacaacaacaacagcaagctCAGCAACAATCGCAACAGCAATCACAGCATCAACAGCCACAACCGCCATCAGTGCCGATAGCTCTCATTGGAGCCGACCCCTCAGCGATAGCACGCGCTGCAATGCAATTACAACATTTGCCAACAAACGTCGAACAACATCCAGTGGTGTACTAG
Protein Sequence: MNSDHTAAPGESSSNPNDSQQSRHSPQQVQQQQQQQQHHQQHQQQQQQQQQQQQQQQQLTHQRHPQQLNEQHVQQQQHHENPGMVGVIQPVGGIDSDVSKQQQQPQQHQLQQLHQHQPSLVSGAPHLGKYWVVTNLFQGPGQPPYNIGVTPTTSAVPTLPPPISSHSSASGPKSGNSKQQQDQQLAPNSHTQSPAHIVSSVGATSLQIPNPMISNASLNQQQLPNGTIIAGPRHPDSLHVHGTMSSDDNRHVSHGMQDIKEEKPFINGKQNNHMAHVNPASSVSSKMNSGNGGNNPQSAEPVGGVQMVNKLQAGGEQQELGTGKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISSHTVTHPTTNVSTSNAGGNTSVSGTVTGSLPPPPPPSTNGNSIVTTNSLTSSGTGAQTAAPPGGVPTATGDLLMPKMENQGMGVDQNTPLLAPDGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPIPGILTQIKQEINPIIIPHQPPTMHTIQQITSTAGSSSATNPVNPALLAPGLVPMVTSTITSHLNPKQQSHQQQQQQQQHQHQQQLQQQQQQQQQLLQLSIQQAAQHQQAEHRQQQQQQQQQQQQQHQQQQQQQSHQQHQQQQQQQQQQQQAQQQSQQQSQHQQPQPPSVPIALIGADPSAIARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00426545;
90% Identity: iTF_00315368;
80% Identity: -