Basic Information

Insect: Neoascia interrupta
Gene Symbol: -
Assembly: GCA_947623515.1
Location: OX392462.1:184791261-184806230[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.2e-05 0.0061 17.9 2.1 1 23 393 415 393 415 0.96

2 18 1.1e-05 0.0016 19.8 0.4 1 23 421 443 421 443 0.97

3 18 2.1e-05 0.003 18.9 0.5 1 23 449 471 449 471 0.98

4 18 1.8e-05 0.0026 19.1 3.1 1 23 477 499 477 499 0.97

5 18 4e-05 0.0058 18.0 4.7 1 23 505 527 505 527 0.99

6 18 7.3e-05 0.011 17.2 5.7 1 23 533 555 533 555 0.97

7 18 2e-07 2.9e-05 25.2 4.3 1 23 561 583 561 583 0.98

8 18 1.3e-07 1.9e-05 25.8 2.4 1 23 589 611 589 611 0.97

9 18 0.00017 0.025 16.0 5.7 1 23 617 639 617 639 0.97

10 18 2.2e-05 0.0031 18.8 6.5 1 23 645 667 645 667 0.98

11 18 3.6e-06 0.00053 21.3 4.5 1 23 673 695 673 695 0.98

12 18 8.4e-06 0.0012 20.1 8.1 1 23 701 723 701 723 0.98

13 18 2.1e-06 0.0003 22.0 7.9 1 23 729 751 729 751 0.98

14 18 7.7e-07 0.00011 23.4 7.7 1 23 757 779 757 779 0.98

15 18 0.00088 0.13 13.8 9.6 1 23 785 808 785 808 0.95

16 18 0.0002 0.03 15.8 0.5 1 23 814 836 814 836 0.97

17 18 0.00091 0.13 13.7 4.4 1 23 846 868 846 868 0.98

18 18 7.5e-06 0.0011 20.3 1.7 1 23 874 897 874 897 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.2e-05	0.0061	17.9	2.1	1	23	393	415	393	415	0.96
2	18	1.1e-05	0.0016	19.8	0.4	1	23	421	443	421	443	0.97
3	18	2.1e-05	0.003	18.9	0.5	1	23	449	471	449	471	0.98
4	18	1.8e-05	0.0026	19.1	3.1	1	23	477	499	477	499	0.97
5	18	4e-05	0.0058	18.0	4.7	1	23	505	527	505	527	0.99
6	18	7.3e-05	0.011	17.2	5.7	1	23	533	555	533	555	0.97
7	18	2e-07	2.9e-05	25.2	4.3	1	23	561	583	561	583	0.98
8	18	1.3e-07	1.9e-05	25.8	2.4	1	23	589	611	589	611	0.97
9	18	0.00017	0.025	16.0	5.7	1	23	617	639	617	639	0.97
10	18	2.2e-05	0.0031	18.8	6.5	1	23	645	667	645	667	0.98
11	18	3.6e-06	0.00053	21.3	4.5	1	23	673	695	673	695	0.98
12	18	8.4e-06	0.0012	20.1	8.1	1	23	701	723	701	723	0.98
13	18	2.1e-06	0.0003	22.0	7.9	1	23	729	751	729	751	0.98
14	18	7.7e-07	0.00011	23.4	7.7	1	23	757	779	757	779	0.98
15	18	0.00088	0.13	13.8	9.6	1	23	785	808	785	808	0.95
16	18	0.0002	0.03	15.8	0.5	1	23	814	836	814	836	0.97
17	18	0.00091	0.13	13.7	4.4	1	23	846	868	846	868	0.98
18	18	7.5e-06	0.0011	20.3	1.7	1	23	874	897	874	897	0.96

Sequence Information

Coding Sequence: ATGTCCAACAACAACAGCAACATCACGAAAATCCTGGTATCAGCGGAGTTATTCAGCCTGTTGGCGGGATCGATTCAGATGTATCCAAACAACAACATCAACATCATCAGTCAACGCTCGTGTCGGCTTGGAAAGTACTGGGTTGTTACGAATCTTTTTCAGGGTCCAGGTCAACCGCCATACAATATTGGTGTAACACCAACAACCTCTGCAGTTCCTACACTACCGCCTCCAATATCATCTCATTCAAGCGCCTCAGCAACGAAATCAGGAAATTCTAAGCAACAACAGCAACAGGATCAACTAGCCCCTAACTCGCACACACAAACTCCAGCACACATAGTATCATCTGTTGGTCCGACATCTCTACAAATACCCAATCCAATGATAACAAATGCAACGATGAATCAGCAGCAGCTTCCGAATGGCACTATTATAGCAGCGCCCCGTCATCCGGATTCTCTTCACGTCCATGGAACGATGTCCTCCGATAATAATCGTCAAGTCTCACACGGTATGCAAGACATCAAGGAGGAGAAACCTTTCGCCAATGGCAAACAAAACAATCACATGGCTCACGTCAATGCAGCATCTTCCGTTCCGACGAAAATGAACGCTGGCAGTGGTGGCAACAATCCGCAATCAGCCGAATCAGGCAGTGGTCAAATGGTTAACAAACTGCAATCCAATAGTGGAGCCAACGGTGGACCCGGCGGTGGTGATCAACAAGAACTGGTCAGTGGCAAACCACCACACGGCGTCGAAATGTACAAAGTCAACATAGAAGATTTGAGTCAATTTCTATCATATCACGAGGTCTTCGGCAAGATCCATGGCGAAGTAATCAACCAACAGCAAATTTCATCGCACACGGTAACGCATCCTACTACGAATGTATCAACCTCAATAGCTGGTGGCAATACCTCTGTTAGCGGTACTGTTTCTGGCTCACTACCTCCACCCCCGCCACCGTCGTCTAATGGCAATACAATAGTGACAACTAACAGCCTCAGCAATGCAGGCACGGGTGCTCAGGCACCTCCTCCACCTGGCAGTGGTCCGGTGGTGGTTGGTTCCGGCGAATTAATAATGCCTAAAATGGAAAACCAAGGCATGGCTGTAGATCAGAATACACCCCTATTGGCACCCGATGGAACGCCCATAATGGGCGGCACGCATATCTGCGACATTTGCGGCAAAATGTTCCAATTCCGCTATCAATTAATCGTACATCGGCGCTATCACAGCGAACGGAAGCCATTCAATTGCCAAGTATGCGGACAAGGATTTACAACGTCGCAAGATCTCACACGTCACGGTAAGATCCATATTGGCGGGCCAATGTTCACGTGTGTCATTTGCTTCAATGTTTTCGCCAATAACGCCAGTCTGGAGCGGCATATGAAACGCCATTCGACCGATAAGCCATTCGCGTGCACAATATGCCAGAAGACATTTGCCCGCAAAGAGCATTTGGACAACCATTTTCGCAGCCATACAGGCGAGACGCCATTCCGTTGTCAGTATTGTGCGAAAACGTTTACGCGAAAGGAGCACATGGTGAATCATGTACGCAAGCATACCGGAGAGACACCGCATCGTTGCGATATTTGTAAAAAATCCTTTACACGGAAAGAACACTATGTAAACCACTACATGTGGCATACAGGTCAAACACCGCATCAATGCGACATTTGTGGGAAAAAGTACACTCGCAAGGAGCATCTGGCCAATCATATGCGATCCCATACGAACGATACACCTTTCCGGTGTGAGATATGTGGCAAGAGTTTTAGCCGAAAGGAGCACTTTACCAATCATATTTTATGGCATACAGGAGAAACCCCTCATCGCTGTGATTTCTGTGCGAAGACGTTCACCAGGAAGGAGCACCTATTGAATCATGTCCGCCAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAAACTCCCTTCAAGTGCACCTATTGTACCAAGGCGTTTACCCGCAAGGATCACATGGTGAATCACATCCGTCAACATACCGGAGAATCGCCGCATAAATGCACCTACTGCACAAAAACGTTCACGAGGAAAGAACATCTGACCAATCATGTGCGCCAGCATACGGGTGAGTCGCCTCATCGTTGCACCTACTGCAAAAAAACCTTTACACGCAAGGAACACCTAACAAATCACATCCGGTTGCATACAGGCGATTCGCCCCACAAGTGCGAATACTGCCAAAAGACGTTCACGCGCAAGGAACATTTGAACAACCATATGCGACAGCACTCCAGCGACAATCCGCACTGTTGTAATGTGTGCAGTAAACCGTTTACACGCAAGGAGCATCTGATCAATCATATGACACGTTGTCATACCGGCGATCGACCCTTTGCCTGTGAGACATGCGGCAAAAGTTTCCCATTGAAAGGCAACTTGCTCTTCCATCAACGCAGTCACACCAAGGGACAAGAGTGTGAGCGTCCATTTTCGTGTGAGAAATGCCCGAAGAACTTCATTTGCAAAGGTCATCTGGTGTCGCATATGCGTTCGCATTCTGGGGAGAAACCACATGCGTGTACAATGTGCAGCAAGGCATTCGTTGAGAGGGGGAATCTAAAGCGACACATGAAGATGAATCATCCCGATGCAGTTATGCCGCCACCTCCGACGCCGATTCCTAATATTTTGACGCAAATCAAACAGGAGATCAATCCCATAATAATTCCGCACCAACCTCCAACAATGCACACAATACAGCAAATCACTTCAACTGCAGGCAGCTCAAGTGCAAACAACCCTGGCAATCCTACCCTATTGGCGCCCGGCCTTgtaccaatggtaacatccactataacttcacatttaaatcaaaagcagcaatcccatcaacagcaacaacagcagcaacaccaacatcagcagcaattgcagcagcaacaacagcttttacagctgtccatacagcaggcggcccaacatcagcaggctgagcatcgacaacagcagcaacaacagcaacaacaccagcaacagcagcaaaatcaccaacaacatcaacaacagcagcagcagcaacaacagcaacaacaacagcagcagcaacaagctcagcaacaatctcaacagcaaccacaacaccaacagccacaaccgccgtcagtgccgcttgctcttattggaacagatccctcagcgatagcgcgcgctgcaatgcagttgcaacatttgccaacgaacgtcgaacaacacccggttgtatattaa
Protein Sequence: MSNNNSNITKILVSAELFSLLAGSIQMYPNNNINIISQRSCRLGKYWVVTNLFQGPGQPPYNIGVTPTTSAVPTLPPPISSHSSASATKSGNSKQQQQQDQLAPNSHTQTPAHIVSSVGPTSLQIPNPMITNATMNQQQLPNGTIIAAPRHPDSLHVHGTMSSDNNRQVSHGMQDIKEEKPFANGKQNNHMAHVNAASSVPTKMNAGSGGNNPQSAESGSGQMVNKLQSNSGANGGPGGGDQQELVSGKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISSHTVTHPTTNVSTSIAGGNTSVSGTVSGSLPPPPPPSSNGNTIVTTNSLSNAGTGAQAPPPPGSGPVVVGSGELIMPKMENQGMAVDQNTPLLAPDGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCSKPFTRKEHLINHMTRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPIPNILTQIKQEINPIIIPHQPPTMHTIQQITSTAGSSSANNPGNPTLLAPGLVPMVTSTITSHLNQKQQSHQQQQQQQHQHQQQLQQQQQLLQLSIQQAAQHQQAEHRQQQQQQQQHQQQQQNHQQHQQQQQQQQQQQQQQQQQAQQQSQQQPQHQQPQPPSVPLALIGTDPSAIARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00426545;
90% Identity: iTF_00315368;
80% Identity: -