Belo036915.1
Basic Information
- Insect
- Baccha elongata
- Gene Symbol
- -
- Assembly
- GCA_951217065.1
- Location
- OX578272.1:209672240-209675762[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4e-05 0.0085 18.1 2.1 1 23 371 393 371 393 0.96 2 18 1e-05 0.0022 20.0 0.4 1 23 399 421 399 421 0.97 3 18 2e-05 0.0043 19.1 0.5 1 23 427 449 427 449 0.98 4 18 1.7e-05 0.0036 19.3 3.1 1 23 455 477 455 477 0.97 5 18 3.9e-05 0.0082 18.2 4.7 1 23 483 505 483 505 0.99 6 18 7.1e-05 0.015 17.4 5.7 1 23 511 533 511 533 0.97 7 18 2e-07 4.1e-05 25.4 4.3 1 23 539 561 539 561 0.98 8 18 1.2e-07 2.6e-05 26.0 2.4 1 23 567 589 567 589 0.97 9 18 0.00017 0.035 16.2 5.7 1 23 595 617 595 617 0.97 10 18 2.1e-05 0.0044 19.0 6.5 1 23 623 645 623 645 0.98 11 18 3.5e-06 0.00074 21.5 4.5 1 23 651 673 651 673 0.98 12 18 8.2e-06 0.0017 20.3 8.1 1 23 679 701 679 701 0.98 13 18 2e-06 0.00042 22.2 7.9 1 23 707 729 707 729 0.98 14 18 7.5e-07 0.00016 23.6 7.7 1 23 735 757 735 757 0.98 15 18 0.00023 0.049 15.7 9.5 1 23 763 786 763 786 0.95 16 18 0.0002 0.041 16.0 0.5 1 23 792 814 792 814 0.97 17 18 0.0031 0.65 12.2 4.0 1 23 824 846 824 846 0.96 18 18 7.3e-06 0.0015 20.5 1.7 1 23 852 875 852 875 0.96
Sequence Information
- Coding Sequence
- ATGAGAATGCATTCACAAAAATTGTATTGCAATTTGTTCTTGCTTGGAAAATACTGGGTTGTTACAAACCTTTTTCAGGGTACCGGCCAACCGCCATACAATATTGGTGTAACATCAACAACATCGGGAGTTCCTTCAATACCGCCTCCAATATCATCTCATTCAAGCGCTTCGGCAGCAAAAGCGGCAAACTctaaacaacagcagcagcaagatcaacaacaacaacaacaacaacaacaattggcACCAAACTCACACACTCAATCCCCAGCAGCGCATATAGTTTCATCGGTTGGTGCCACATCCTTACAAATACCGAATCCAATGATAAATGCTGTGATGAATCAGCATCAGCTTCCAAATGGTACAATAATCGCAGGCCCACGTCATCCGAATACTTTGCACGTTCATggaacgATGCCCAGCGACGACAATCGACATGTCTCACACGGTATGCAGGACATTAAGGAGGAAAAACCGTTTGCCAATGGCAAACCAAACATTCATATGTCACATGCTAATTCAGCATCATCGCTTTCGTCAAAAATGAATTCTAGTGGTGGCGGAAGTAATGGCCAAACTTCTGAAAGTGGTGGTGTGCAAATGGTAAAACTACAGCCTGGGTCTGTTCCTGGTGGGGTTCCTGGTGTTGGTAGTGGAGGAGGTAGTGAACAACAAGAGAGCAAACCACCCCACGGCGTTGAAATGTACAAAGTTAATATTGAAGATTTGAGTCAATTTCTATCATATCACGAGGTCTTTGGCAAGATACATGGAGAAGTAATCAACCAACAACAAATATCGCACACGGTAACTAATCCTACTCCGAATGTATCGACCTCGAATGCAGGGGGGAATACCTCAGTCAGTGGTTCTGTTTCTGGCTCACTACCTCCACCACCGTCGACTAATGGAAACGCGATAGTGGCCACCAACAACCTTTCCAGTTCTGGGACTGGTGTTCAACCGGTTCCGACTACAGGGTCCGGAGTTGTACCCACTGCACCCGGTGAACTAATCCTACCCAAGATGGAAAACCAAGGAATGGGTGTCGACCAAAACACCCCATTGTTGGCACCGGACGGAACACCCATAATAGGCGGCACGCATATCTGTGACATTTGCGGCAAAATGTTCCAATTTCGCTATCAGTTAATTGTACATCGTCGTTATCACAGTGAACGCAAACCATTCAACTGTCAAGTTTGTGGACAGGGATTTACCACATCACAAGATCTCACACGGCATGGCAAGATTCACATTGGTGGACCAATGTTTACGTGTGTGatatgttttaatgtttttgccAATAATGCCAGTTTAGAGCGTCACATGAAACGTCATTCTACTGATAAACCATTTGCGTGCACAATATGCCAGAAAACATTTGCCCGTAAAGAGCATCTGGACAACCATTTTCGCAGTCATACGGGTGAAACCCCGTTTCGTTGTCAATATTGTGCGAAAACATTTACACGAAAAGAACACATGGTGAATCATGTGCGAAAGCATACCGGAGAAACGCCACATCGTTGCGATATTTGTAAGAAATCTTTTACGCGGAAAGAACACTATGTTAATCATTACATGTGGCACACAGGTCAGACACCGCATCAATGCGATATATGTGGAAAGAAGTATACAAGGAAGGAACATTTGGCCAATCATATGCGATCCCATACTAATGACACACCATTTCGGTGTGAAATTTGCGGAAAAAGTTTTAGCAGAAAGGAACACTTTACTAATCATATTTTATGGCATACAGGAGAAACCCCTCACCGCTGTGATTTCTGTGCGAAGACATTTACCAGAAAGGAGCACCTATTGAACCATGTTCGTCAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAAACACCATTTAAGTGCACCTACTGTACAAAGGCGTTCACACGAAAGGATCATATGGTTAATCACATCCGTCAACATACTGGAGAGTCACCACATAAATGCACCTACTGCACGAAAACCTTTACAAGGAAAGAGCATCTCACTAATCATGTGCGCCAACATACGGGTGAGTCGCCACATCGTTGCACCTActgcaaaaaaacatttacacggAAGGAACACCTAACGAATCACATCCGGCTGCATACAGGCGATTCGCCCCATAAGTGCGAATACTGCCAAAAGACGTTCACACGTAAGGAGCATCTGAACAATCACATGCGGCAACATTCGAGTGACAACCCGCACTGCTGCAATGTTTGCAACAAGCCGTTCACACGCAAAGAGCATCTGATTAATCATATGTCACGTTGTCATACTGGCGATCGGCCATTTGCTTGCGAGACTTGTGGCAAAAGTTTTCCGCTCAAAGGCAACTTGCTCTTCCATCAACGCAGCCACACAAAGGGGCAGGAGTGCGAACGTCCATTTTTATGCGAAAAATGCCCAAAGAATTTCATATGTAAAGGTCATTTGGTATCGCACATGAGGTCCCATTCTGGAGAAAAACCACATGCTTGTACCATGTGCAGCAAAGCATTTGTAGAAAGAGGAAATCTCAAACGTCACATGAAGATGAATCATCCAGATGCAGTAATGCCGCCACCGCCAACACCTATTCCTGGGCTTCTGACTCAAATCAAACAGGAAATAAAGCCGATAATAACCTTGAACCAAATATTATACTATACTAATATTAAAACTGGGGAGTTTGTAAAATTAAGTTCTTCCATTGGGGAGCTCTGCATTTGGGACCCTCAGTTACATTCAAATAAATGTGCTGAATCAGAAAATGAGCAGCATAAAAGTATCCCTATTACTTGCTATTACAGTCCAGTCAAATTAGACATTGACCCGGACATTTAA
- Protein Sequence
- MRMHSQKLYCNLFLLGKYWVVTNLFQGTGQPPYNIGVTSTTSGVPSIPPPISSHSSASAAKAANSKQQQQQDQQQQQQQQQLAPNSHTQSPAAHIVSSVGATSLQIPNPMINAVMNQHQLPNGTIIAGPRHPNTLHVHGTMPSDDNRHVSHGMQDIKEEKPFANGKPNIHMSHANSASSLSSKMNSSGGGSNGQTSESGGVQMVKLQPGSVPGGVPGVGSGGGSEQQESKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISHTVTNPTPNVSTSNAGGNTSVSGSVSGSLPPPPSTNGNAIVATNNLSSSGTGVQPVPTTGSGVVPTAPGELILPKMENQGMGVDQNTPLLAPDGTPIIGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFLCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPIPGLLTQIKQEIKPIITLNQILYYTNIKTGEFVKLSSSIGELCIWDPQLHSNKCAESENEQHKSIPITCYYSPVKLDIDPDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00426545;
- 90% Identity
- -
- 80% Identity
- -