Basic Information

Insect: Cheilosia pagana
Gene Symbol: -
Assembly: GCA_936435595.1
Location: CAKZFE010000004.1:5965799-5974645[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.3e-05 0.0038 17.8 2.1 1 23 467 489 467 489 0.96

2 18 1.1e-05 0.001 19.7 0.4 1 23 495 517 495 517 0.97

3 18 2.1e-05 0.0019 18.8 0.5 1 23 523 545 523 545 0.98

4 18 1.8e-05 0.0016 19.0 3.1 1 23 551 573 551 573 0.97

5 18 4.1e-05 0.0037 17.9 4.7 1 23 579 601 579 601 0.99

6 18 7.5e-05 0.0068 17.1 5.7 1 23 607 629 607 629 0.97

7 18 2.1e-07 1.9e-05 25.1 4.3 1 23 635 657 635 657 0.98

8 18 1.3e-07 1.2e-05 25.7 2.4 1 23 663 685 663 685 0.97

9 18 0.00018 0.016 15.9 5.7 1 23 691 713 691 713 0.97

10 18 2.2e-05 0.002 18.7 6.5 1 23 719 741 719 741 0.98

11 18 3.7e-06 0.00034 21.2 4.5 1 23 747 769 747 769 0.98

12 18 8.7e-06 0.00078 20.0 8.1 1 23 775 797 775 797 0.98

13 18 2.1e-06 0.00019 21.9 7.9 1 23 803 825 803 825 0.98

14 18 7.9e-07 7.1e-05 23.3 7.7 1 23 831 853 831 853 0.98

15 18 0.00025 0.022 15.4 9.5 1 23 859 882 859 882 0.95

16 18 0.00021 0.019 15.7 0.5 1 23 888 910 888 910 0.97

17 18 0.00093 0.084 13.6 4.4 1 23 920 942 920 942 0.98

18 18 7.7e-06 0.00069 20.2 1.7 1 23 948 971 948 971 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.3e-05	0.0038	17.8	2.1	1	23	467	489	467	489	0.96
2	18	1.1e-05	0.001	19.7	0.4	1	23	495	517	495	517	0.97
3	18	2.1e-05	0.0019	18.8	0.5	1	23	523	545	523	545	0.98
4	18	1.8e-05	0.0016	19.0	3.1	1	23	551	573	551	573	0.97
5	18	4.1e-05	0.0037	17.9	4.7	1	23	579	601	579	601	0.99
6	18	7.5e-05	0.0068	17.1	5.7	1	23	607	629	607	629	0.97
7	18	2.1e-07	1.9e-05	25.1	4.3	1	23	635	657	635	657	0.98
8	18	1.3e-07	1.2e-05	25.7	2.4	1	23	663	685	663	685	0.97
9	18	0.00018	0.016	15.9	5.7	1	23	691	713	691	713	0.97
10	18	2.2e-05	0.002	18.7	6.5	1	23	719	741	719	741	0.98
11	18	3.7e-06	0.00034	21.2	4.5	1	23	747	769	747	769	0.98
12	18	8.7e-06	0.00078	20.0	8.1	1	23	775	797	775	797	0.98
13	18	2.1e-06	0.00019	21.9	7.9	1	23	803	825	803	825	0.98
14	18	7.9e-07	7.1e-05	23.3	7.7	1	23	831	853	831	853	0.98
15	18	0.00025	0.022	15.4	9.5	1	23	859	882	859	882	0.95
16	18	0.00021	0.019	15.7	0.5	1	23	888	910	888	910	0.97
17	18	0.00093	0.084	13.6	4.4	1	23	920	942	920	942	0.98
18	18	7.7e-06	0.00069	20.2	1.7	1	23	948	971	948	971	0.96

Sequence Information

Coding Sequence: ATGAATTCGGATCATACAGCAGCTCCTGGCGAGTCGTCATCAAATCCGAATGACTCTCAACAAAGTCGGCATTCGCCGCAGCAGgcccagcagcaacaacaacaacaacagcagcatcatcagcagcagcatcaacaacaacaacaacagcagcagcaacagcaacaacaactcaCTCACCAGCGCCATCCGCAACAATTGAATGAACAACATgtccagcaacagcaacatcagCATCACGAAAATCCTGGTATTGTCGGAGTTATTCAGCCTGTTGGCGGGATCGATTCGGATGTATccaaacaacagcagcagccgcaGCAGCATCAACTACAACATCACCAGCATCAGCCATCGCTTGTATCGGGTGCCCCACACCTTGGAAAATACTGGGTTGTCACGAATCTATTCCAAGGACCAGGTCAGCCGCCATACAATATTGGTGTAACGCCAACAACCTCAGCAGTTCCTACACTACCGCCTCCAATATCATCTCATTCAAGCGCCTCAGGACCAAAATCAGGAAACTCTAAGCAACAGCAAGATCAACAACTAGCTCCAAACTCGCACACACAATCGCCAGCACACATAGTCTCTTCCGTCGGTGCAACGTCTCTCCAAATACCCAATCCAATGATTACGAACGCCTCATTGAATCAGCAGCAGCTTCCGAATGGCACAATTATTGCCGGACCACGTCATCCGGACTCCCTACACGTCCATGGAACGATGTCCGCCGACGATAATCGACACGTCTCACACGGTATGCAAGACATAAAGGAGGAGAAACCTTTTATAAATGGCAAGCAAAACAATCACATGGCTCATGTCAATCCAGCATCTTCCGTTTCGTCGAAAATGAATTCTGGCAGTGGTGGCAACAATCCGCAATCGGCCGAATCCGGTGGTGGCGGCGTTCAAATGGTTAACAAACTGCAAGCGGGCGGTGAACAACAAGAGCTGAGCACCGGTAAGCCGCCACACGGCGTCGAAATGTACAAAGTCAATATCGAAGATTTGAGTCAATTTCTATCATATCACGAGGTCTTTGGCAAGATCCATGGCGAAGTAATTAATCAACAGCAAATATCATCGCACACGGTAACGCATCCTACTACAAATGTATCAACCTCAAATGCTGGTGGCAATACCTCTGTGAGTGGTACTGTTACCGGTTCACTACCTCCACCCCCGCCACCATCGACTAATGGCAATTCGATAGTGACAACCAACAGCCTTACCAGTTCAGGGACTGGTGCACAAACAGCTGCGCCGCCAGGTGGTGTACCCACCGCCACCGGTGATCTTCTAATGCCCAAAATGGAGAATCAGGGTATGGGCGTCGATCAGAATACCCCACTGTTGAACGCTGACGGCACCCCAATAATGGGCGGTACGCATATCTGTGACATTTGCGGCAAAATGTTCCAATTTCGCTATCAACTAATTGTACATCGTCGCTACCACAGTGAACGTAAGCCATTCAATTGCCAAGTATGCGGACAGGGATTTACAACGTCACAAGATCTCACCCGCCACGGCAAGATCCATATTGGCGGGCCAATGTTCACGTGTGTCATCTGCTTTAATGTGTTTGCCAACAACGCCAGTCTGGAACGGCATATGAAACGCCACTCGACCGATAAGCCATTCGCGTGCACCATATGCCAGAAGACATTTGCCCGCAAAGAGCACTTGGACAACCATTTTCGCAGTCATACGGGCGAGACGCCATTCCGTTGTCAGTATTGTGCGAAAACGTTTACGCGAAAGGAACACATGGTGAATCATGTGCGCAAGCATACCGGAGAGACGCCGCATCGTTGCGATATTTGTAAGAAATCTTTTACGCGGAAAGAGCACTATGTAAACCATTACATGTGGCATACAGGTCAGACGCCGCACCAATGTGACATTTGTGGGAAGAAGTACACTCGGAAGGAACATCTAGCCAATCATATGCGCTCCCATACGAACGATACACCATTCCGGTGTGAGATATGCGGCAAGAGTTTCAGCAGAAAGGAACACTTTACCAACCACATTTTATGGCACACAGGAGAAACCCCTCATCGCTGTGATTTCTGTGCGAAGACGTTTACCAGGAAGGAGCATCTATTGAACCATGTCCGCCAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAAACCCCCTTCAAGTGCACCTACTGTACTAAGGCGTTTACTCGAAAGGATCACATGGTGAATCACATCCGTCAACATACTGGAGAGTCTCCGCATAAATGCACCTACTGCACGAAAACCTTTACGAGGAAAGAACATCTGACCAATCATGTGCGCCAACATACGGGTGAGTCGCCTCATCGTTGCACCTactgcaaaaaaacatttacacgCAAGGAACACCTAACGAATCACATCCGGTTGCATACAGGCGATTCGCCCCACAAATGCGAATACTGCCAAAAGACGTTCACACGCAAGGAGCACTTGAACAACCACATGCGACAACACTCGAGTGACAATCCACATTGCTGTAATGTGTGCAACAAACCGTTTACACGCAAGGAACACTTGATCAATCATATGTCACGCTGTCATACCGGCGATCGGCCGTTTGCCTGTGAAACATGCGGAAAGAGTTTTCCACTAAAAGGTAACTTGCTCTTCCATCAGCGCAGTCACACCAAAGGCCAAGAGTGTGAGCGTCCGTTTTCGTGCGAGAAGTGCCCGAAGAATTTCATATGCAAAGGTCATCTGGTGTCGCATATGCGTTCGCATTCAGGTGAGAAACCACATGCCTGCACCATGTGCAGTAAGGCATTTGTGGAGAGAGGGAACCTCAAGCGTCACATGAAGATGAATCATCCCGATGCAGTTATGCCACCGCCGCCGACACCAATTCCGGGTATTTTGACACAAATCAAGCAGGAAATCAATCCAATAATAATTCCTCATCAACCTCCAACCATGCACACGATACAGCAAATCACTTCAACTGCAGGCAGCTCAAGTGCAACTAACCCAGTTAATCCAGCCCTTCTGGCGCCCGGTCTTGTACCAATGGTAACATCTACAATAACTTCACACATTAATCAAAAGCAGCAATcccatcaacagcagcagcaacagcaccaacatcaacagcagttgcagcaacagcagcagcaacagcagctcTTACAGCTCTCCATTCAGCAGGCAGCTCAGCATCAGCAGGCTGAACATcggcagcaacaacagcaacagcagcagcaacaacagcagcagcaacagcatcaacagcagcaacaacagcaaagtcatcaacaacaccaacaacaacagcagcaacaacaacagcaagttCAGCAACAATCACAGCATCAACAGCCACAACCGCCACCAGTGCCGATAGCTCTCATTGGAGCCGACCCCTCAGCGATAGCACGCGCTGCAATGCAACTACAGCATTTGCCAACCAACGTCGAACAACATCCAGTGGTGTACTAG
Protein Sequence: MNSDHTAAPGESSSNPNDSQQSRHSPQQAQQQQQQQQQHHQQQHQQQQQQQQQQQQQLTHQRHPQQLNEQHVQQQQHQHHENPGIVGVIQPVGGIDSDVSKQQQQPQQHQLQHHQHQPSLVSGAPHLGKYWVVTNLFQGPGQPPYNIGVTPTTSAVPTLPPPISSHSSASGPKSGNSKQQQDQQLAPNSHTQSPAHIVSSVGATSLQIPNPMITNASLNQQQLPNGTIIAGPRHPDSLHVHGTMSADDNRHVSHGMQDIKEEKPFINGKQNNHMAHVNPASSVSSKMNSGSGGNNPQSAESGGGGVQMVNKLQAGGEQQELSTGKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISSHTVTHPTTNVSTSNAGGNTSVSGTVTGSLPPPPPPSTNGNSIVTTNSLTSSGTGAQTAAPPGGVPTATGDLLMPKMENQGMGVDQNTPLLNADGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPIPGILTQIKQEINPIIIPHQPPTMHTIQQITSTAGSSSATNPVNPALLAPGLVPMVTSTITSHINQKQQSHQQQQQQHQHQQQLQQQQQQQQLLQLSIQQAAQHQQAEHRQQQQQQQQQQQQQQQHQQQQQQQSHQQHQQQQQQQQQQVQQQSQHQQPQPPPVPIALIGADPSAIARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00426545;
90% Identity: iTF_00315368;
80% Identity: -