Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288108.1:117857842-117871344[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.5e-05 0.0068 17.8 2.1 1 23 447 469 447 469 0.96

2 18 1.2e-05 0.0018 19.7 0.4 1 23 475 497 475 497 0.97

3 18 2.2e-05 0.0034 18.8 0.5 1 23 503 525 503 525 0.98

4 18 1.9e-05 0.0029 19.0 3.1 1 23 531 553 531 553 0.97

5 18 4.3e-05 0.0065 17.9 4.7 1 23 559 581 559 581 0.99

6 18 7.9e-05 0.012 17.1 5.7 1 23 587 609 587 609 0.97

7 18 2.2e-07 3.3e-05 25.1 4.3 1 23 615 637 615 637 0.98

8 18 1.4e-07 2.1e-05 25.7 2.4 1 23 643 665 643 665 0.97

9 18 0.00019 0.028 15.9 5.7 1 23 671 693 671 693 0.97

10 18 2.3e-05 0.0035 18.7 6.5 1 23 699 721 699 721 0.98

11 18 3.9e-06 0.00059 21.2 4.5 1 23 727 749 727 749 0.98

12 18 9.1e-06 0.0014 20.0 8.1 1 23 755 777 755 777 0.98

13 18 2.2e-06 0.00033 22.0 7.9 1 23 783 805 783 805 0.98

14 18 8.3e-07 0.00012 23.3 7.7 1 23 811 833 811 833 0.98

15 18 0.00026 0.039 15.4 9.5 1 23 839 862 839 862 0.95

16 18 0.00022 0.033 15.7 0.5 1 23 868 890 868 890 0.97

17 18 0.00098 0.15 13.6 4.4 1 23 900 922 900 922 0.98

18 18 8.1e-06 0.0012 20.2 1.7 1 23 928 951 928 951 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.5e-05	0.0068	17.8	2.1	1	23	447	469	447	469	0.96
2	18	1.2e-05	0.0018	19.7	0.4	1	23	475	497	475	497	0.97
3	18	2.2e-05	0.0034	18.8	0.5	1	23	503	525	503	525	0.98
4	18	1.9e-05	0.0029	19.0	3.1	1	23	531	553	531	553	0.97
5	18	4.3e-05	0.0065	17.9	4.7	1	23	559	581	559	581	0.99
6	18	7.9e-05	0.012	17.1	5.7	1	23	587	609	587	609	0.97
7	18	2.2e-07	3.3e-05	25.1	4.3	1	23	615	637	615	637	0.98
8	18	1.4e-07	2.1e-05	25.7	2.4	1	23	643	665	643	665	0.97
9	18	0.00019	0.028	15.9	5.7	1	23	671	693	671	693	0.97
10	18	2.3e-05	0.0035	18.7	6.5	1	23	699	721	699	721	0.98
11	18	3.9e-06	0.00059	21.2	4.5	1	23	727	749	727	749	0.98
12	18	9.1e-06	0.0014	20.0	8.1	1	23	755	777	755	777	0.98
13	18	2.2e-06	0.00033	22.0	7.9	1	23	783	805	783	805	0.98
14	18	8.3e-07	0.00012	23.3	7.7	1	23	811	833	811	833	0.98
15	18	0.00026	0.039	15.4	9.5	1	23	839	862	839	862	0.95
16	18	0.00022	0.033	15.7	0.5	1	23	868	890	868	890	0.97
17	18	0.00098	0.15	13.6	4.4	1	23	900	922	900	922	0.98
18	18	8.1e-06	0.0012	20.2	1.7	1	23	928	951	928	951	0.96

Sequence Information

Coding Sequence: atgaattctgATCATACATCAGTTCCTGGCGAGTCATCATCTAATCCGAATGACTCGCAACAAAATCGGCATTCGCCGCAGCAGGCTcagcaacaacatcatcaacatcaacagcagcaacaacttGCACATCAACGACACCCGCAACAATTGAATGAAcAACATGTCCAGCAACACCATCACGAAAATCCTGCTGGTGGTATTAGTGGAGTTATTCATCCTGTAAGCGGGATTGATTCAGATGTATCCAAACAACAACATCCGCACCTTCAGCCATCACACGTCTCGGGTTCCCAACAACAACATCTTGGAAAATACTGGGTTGTTACGAATCTTTTTCAGGGTTCCGGTCAGCCGCCATACAATATTGGTGTAACTCCAACAACTTCAGCAGTTCCTTCTATACCGCCTCCGATATCTTCGCATTCTAGTGCTTCGGCAGCCAAGGCAGCAAACTCtaagcaacagcagcagcaggatCAACAACAGCAGCTAGCAACAAACTCGCACACTCAATCTTCATCGACACATATAGTTTCATCTGTTGGTGCTACATCCCTTCAGATACCCAATCCAATGATAAATACGGGAATGAACCAGCACCAGCTTCCAAATGGCACAATAATCGCAGGTCCACGTCATCCGGATAACTTACACGTtcatgGAACGATGTCTGGCGATGACAATCGACACGTTACACACGTTATGCAGGATATTAAGGAGGAAAAGCCTTTTGCCAATGGCAAGCCAAACATACATATGGCACATGTCAATCCAACAACTTCCATTtcgtcaaaaattaattctggCAATGCAGGAAACAATGGGCAATCAACTGAACCTGGTGGTAGTCAAATGGTTAAATTACAACCAGGTTCTGGGCCTGGGACTGGTAGTGGTAACGATCAAGAAAGCAAACCACCACACGGTGTTGAAATGTATAAAGTCAATATTGAAGACTTGAGTCAATTTTTATCATATCACGAAGTGTTTGGCAAGATCCATGGGGAAGTAATAAATCAACAGCAAATATCGCACACGGTAACTCATCCTACTACGAATGTATCGACTTCGAATGCTGGCGGAAACACCTCCGTTAGTGGTTCTGTTTCCGGCTCATTACCTCCACCACCGTCAACTAATGGCAACTCGATAGTGTCAACCAATAGTCTAACCAGTTCAGGAACTGGTGCCCAAGTTGTTCCGCCGATAGGCACTACTGGTGTACCAACTACACCTGGAAAACTTATTCTTCCCAAAATGGAAAATCAAGGGATGGGTGTTGATCAAAACCCACCACTGCTTGCACCAGACGGAACACCCATTATGGGTGGCACGCATATCTGTGACATTTGCGGCAAAATGTTCCAATTCCGTTATCAGTTAATTGTGCATCGTCGCTATCACAGTGAACGCAAGCCATTTAACTGTCAAGTTTGCGGACAGGGATTCACCACATCGCAAGATCTCACGCGACATGGTAAGATTCACATTGGTGGACCAATGTTCACATGTGTGATTTGCTTCAATGTGTTTGCCAATAATGCTAGCTTGGAGCGGCACATGAAACGCCATTCTACGGACAAACCTTTTGCGTGTACCATATGTCAGAAGACATTTGCCCGCAAAGAGCATCTGGACAACCACTTTCGTAGTCATACTGGCGAGACGCCTTTCCGTTGTCAGTATTGTGCAAAAACATTTACACGAAAAGAGCATATGGTGAATCATGTCCGCAAACATACAGGAGAGACTCCACATCGTTGCGATATATGTAAGAAATCTTTTACGAGGAAAGAACACTATGTTAATCATTACATGTGGCACACAGGTCAAACACCTCATCAGTGCGATATATGTGGCAAGAAATATACAAGGAAGGAACACCTGGCCAATCATATGCGATCACATACGAATGATACACCATTCCGGTGTGAAATTTGTGGCAAGAGTTTTAGCAGAAAGGAACATTTTACCAATCATATTTTATGGCATACAGGAGAAACCCCTCATCGCTGTGATTTCTGTGCGAAGACGTTCACCAGGAAGGAGCACCTATTGAACCATGTCCGACAACACACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAAACACCCTTCAAGTGTACCTACTGTACCAAGGCTTTCACACGTAAGGATCATATGGTAAATCACATCCGTCAACACACTGGAGAATCCCCACATAAATGCACTTACTGCACAAAAACCTTCACCCGGAAAGAGCATCTAACCAACCATGTGCGCCAACATACTGGCGAGTCGCCACATCGTTGCACCTACTGCAAAAAAACCTTTACACGCAAGGAACACCTGACCAATCATATCCGGTTGCATACAGGCGATTCGCCCCATAAATGCGAATACTGCCAAAAGACGTTCACACGTAAAGAGCATCTCAATAATCATATGCGGCAGCATTCGAGTGACAACCCGCACTGTTGCAATGTGTGCAACAAGCCGTTTACACGCAAGGAGCATTTGATCAATCATATGTCGCGTTGTCATACCGGCGATCGACCATTTGCTTGCGAGACTTGTGGTAAAAGTTTTCCACTCAAAGGCAACTTGCTCTTCCATCAACGCAGTCACACTAAAGGTCAGGAATGTGAACGTCCATTTTCTTGCGAGAAATGTCCGAAGAATTTCATTTGTAAAGGTCATTTGGTTTCGCATATGCGATCTCATTCTGGAGAAAAGCCACATGCTTGCACCATGTGCAGTAAGGCTTTTGTAGAAAGAGGGAATCTTAAGCGTCACATGAAAATGAATCATCCGGATGCTGTTATGCCACCACCTCCAACACCTTTGCCCAATCTTCTGACCCAAATTAAGCAGGAAATCAAGCCGATTATAATTCCTCATCAACCCCCAACTATGCATACAATTCAGCAAATCACTTCAACTGCAGGCAGCACAAGTGCAAATAATCCTGGCAATCCCGCCTTGCTGGCACCTGGTCTGGTTCCAATGGTTACATCAACTATAACTTCACACATAAAACAGCAAACTCActtacaacaacagcaacagcagcaacagcaccaACACCAACATCAATTGCAACAGCAACAGCTTTTGCAGTTGTCGATTCAGCAAGCAGCTCAACAAGCTGAGcatcgacaacaacaacaacaacagcaacaacaacagcaacaacaacagcaacaacaacagcaacaacaacagcaacaacaacaacagcaacatcagcaacaaagccatcaacaacaccaacagcaacaaGCTCAACAACAATCGCAACAGCAACCACAGCAGCATCAACAGCCTCAACCGCCTTCAGTGCCGTTAGCTCTCATTGGAGCCGATCCCTCAGCTATAGCTCGCGCTGCTATGCAACTACAACATTTGCCAACCAATGTCGAACAACATCCAGTGGTGTATTAG
Protein Sequence: MNSDHTSVPGESSSNPNDSQQNRHSPQQAQQQHHQHQQQQQLAHQRHPQQLNEQHVQQHHHENPAGGISGVIHPVSGIDSDVSKQQHPHLQPSHVSGSQQQHLGKYWVVTNLFQGSGQPPYNIGVTPTTSAVPSIPPPISSHSSASAAKAANSKQQQQQDQQQQLATNSHTQSSSTHIVSSVGATSLQIPNPMINTGMNQHQLPNGTIIAGPRHPDNLHVHGTMSGDDNRHVTHVMQDIKEEKPFANGKPNIHMAHVNPTTSISSKINSGNAGNNGQSTEPGGSQMVKLQPGSGPGTGSGNDQESKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISHTVTHPTTNVSTSNAGGNTSVSGSVSGSLPPPPSTNGNSIVSTNSLTSSGTGAQVVPPIGTTGVPTTPGKLILPKMENQGMGVDQNPPLLAPDGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPLPNLLTQIKQEIKPIIIPHQPPTMHTIQQITSTAGSTSANNPGNPALLAPGLVPMVTSTITSHIKQQTHLQQQQQQQQHQHQHQLQQQQLLQLSIQQAAQQAEHRQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQSHQQHQQQQAQQQSQQQPQQHQQPQPPSVPLALIGADPSAIARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00426545;
90% Identity: iTF_00976727;
80% Identity: -