Cver018735.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949126925.1
- Location
- OX421360.1:55511825-55521487[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-116 2.4e-111 372.6 32.2 1 299 137 427 137 428 0.93 2 2 0.11 3.6e+03 -2.2 4.6 223 243 459 479 430 502 0.44
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTGAAACAATCCAATGGATTGATCTACGATGAACGCAACACGCAGGAGGAGAATAACAATTTGAAAAAGTCACCGGACTACGATGAGATCGGCGAGGAGTTCGATTTCAGTGATAGTGAACTAAATGCGTTAAACGGTGACGACAGTGTTGATCAAGTGAATTCTAGTGACGTGGTAGTTTGTGATACAGTAAATAATGGGCTCGTCACAAAGCCCGCAAATCTAAGCCTCGATCAGGCGAAGGAAGTCGATGGATATTGTCCAATGACACCGCGAAAAATTGTCGACTGCGGTGAGAACGGCTCGCATGGATATAACAGCGATGGAACCAACGACGATGTGGCAGAGGAAGATGACGAGCTGATTGTACAATTTTTAGGACAATCTAATCAAATTGCTGAGGCGAGGCTGGCAGCTAGACGGCAGGCTCGTGCAGAAGCGCGAGAAATTCGCATGCGCGAATTGGAACGCCAACAAAAAGAACTAGAACAAAATGCCGATCGGGTATTTGATATGCAAACAGCGGCAGGCATTGATCCACTGGCCAGGTCGCGTCTTACTGCGGCCAGCGTTACGGGCGTAGTCAATTCCGTACGTGCTAGTTCGATGTCATCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGTCGCAGCTTACGTGATATAAGGCATGAACTCAAGgatgtCGAGGAACGCTTTCGAAAGGCGATGATAGCCAATGCACAGCTGGATAACGAACGAGCCTCGCAATCCTATCAAATTCAACTGCTCAAGGATAAACTCGAGGAAATGGAAGAATCTTTTGCCCAGCTGCAGCGTGAATTCAAAGAAAAGTCACGCGAATGCAATGCTCTCAAGCGTAATCTTGACAAATTGACAGAAGAGTTGAAGCTTGTCCATGGTCAGCTCAATGAAAGGGATGCGCTTATAGCTGAACAGGGTTTGGTAATTTTAGCGGTAGAAAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTGTAGAGAATGCACAACTGTTAGGTTCGGTACAAGGTTCGCTGGATGTTCGACTCAAAAAGTTCAGCGAAGAGAAACAGCAACTTCAGGCCGAAGTAGCAAATCTACAGGAACAATTAGAAAATGTTAAGACACAGGGACGAGGTCGGGGCAATTCGATGAATGGCCCACTAGGATCTGATGATGACTATGAAGCTCAAAGAGAAGCCAACAAAATTATCTCCGACTACAAATACAAACTGCAGAAGGCGGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTAATACGATATAAGAGTACAGCGGAAGCAGCTGAGAAAGCCGAGGCGGAACTGAAAATCGAGAGGAGAAAGCTTCAACGAGAGAATCGAGAGGCAACGGAGCGATTAGAAGAACTAGAAACATCTAATAATCACCTATTGAAACGACTGGACAAATTAAAGAATGCAAAGAGTGCGCTCCTCAAAGAACTTTGA
- Protein Sequence
- MSEVLKQSNGLIYDERNTQEENNNLKKSPDYDEIGEEFDFSDSELNALNGDDSVDQVNSSDVVVCDTVNNGLVTKPANLSLDQAKEVDGYCPMTPRKIVDCGENGSHGYNSDGTNDDVAEEDDELIVQFLGQSNQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKSRECNALKRNLDKLTEELKLVHGQLNERDALIAEQGLVILAVENEDGSDAKRALVTVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVANLQEQLENVKTQGRGRGNSMNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312609; iTF_00313474; iTF_00426338; iTF_00664072; iTF_00671586; iTF_01223426; iTF_01253890; iTF_01542210; iTF_01396516; iTF_01044710; iTF_00311815; iTF_00314305; iTF_00311052; iTF_00315181; iTF_01116455; iTF_01395836; iTF_00974664; iTF_01211944; iTF_01522664; iTF_01521886; iTF_00310250; iTF_01002796; iTF_00188111; iTF_00427151; iTF_00240752; iTF_00672211; iTF_00672841; iTF_00389620; iTF_00724791; iTF_00893880; iTF_01300889; iTF_00670941; iTF_00991806; iTF_00688666; iTF_00976479; iTF_01300031; iTF_01541439;
- 90% Identity
- iTF_00313474;
- 80% Identity
- -