Nint007495.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:4495783-4506232[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-114 1.7e-109 366.7 31.7 1 299 154 444 154 445 0.93 2 2 0.12 4.2e+03 -2.3 4.6 223 243 476 496 447 519 0.44
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTGAAACCCAGCAACGGATTGATCTATGATCAACGCAACGCGGAGGAGGATAGCACCGTGTTGAAAAGCCCCCCGGATTATGACGAAATCGGTGAAGAATTCCACTTTAGTGATAGTGAATTGAGTGCGTTGGACGGTGATGATAATGATGCCCCCAAAGCTGATGCTAAAGTGAATACCAGTAGTGCAAGTGACGTATGCGATAATGTGAGTAATAGGGTCGCCGGGAAGCCCGCAAGTCTTAATTTCGACCAAACAAAAGACGTCCAAATCGATGCTTTTTGTCCGATTACGCCGCGCAAAATCATGGACTGTGAGGAGGACGGTGACAAGTTTACCGGCGAAAATGCCTCGAATGGATACAGCAGCGGTGATGGGCTCGAAGACGACTCTGCCGAGCAAGATGACGAGATGATTGTACAATTTTTAGGACAGGCTAATCAAATTGCCGAAGCGAGACTGGCAGCCAGGCGGCAGGCGCGGGCAGAAGCGCGAGAAATTCGCATGCGCGAACTGGAGCGCCAGCAGAAGGAACTAGAACAAAATGCCGATCGGGTATTTGACATGCAAACAGCAGCCGGTATTGACCCCCTGGCAAGGTCGCGCCTTACCGCGTCTAGTGTTACCGGGTTGGTCAATTCTGTTCGTGCTTGTTCGTTGTCTTCCCGCCGCAGCAGTGAAGATTCCTTGGAGGAGGAAGGACGCAGCTTACGTGATATTAGGCATGAACTCAAGGATGTCGAGGAACGCTTTCGAAAGGCAATGATAGCCAATGCACAGTTAGACAACGAACGAGCCTCACAATCCTATCAAATTCAACTGCTCAAGGATAAGCTCGAAGAAATGGAAGAGTCATATTCCCAGCTGCAGCGTGAATTCAAGGAGAAGTCACGCGAAAGCAATGCTTTCAAGCGAAACCTGGACAAGCTTACCGAGGAGCTGAAGCTCGTTCATGGTCAGCTAACGGAACGAGACGCTCTTATAGCTGAACAGGGTTTGGTCATTGTTGCAGTAGAGAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCAGTGTAGAGAATGCACAATTGTTAGGATCTGTACAAGGTTCTCTAGATGTCCGACTCAAAAAGTTCAGCGAAGAGAAACAGCAACTTCAGATCGAAGTGCAAAACTTACAGGAACAATTAGAAAATGTGAAAACACAGGGACGGGGTCGTGGCAACTCAATGAACGGTCCACTCGGCTCCGATGATGATTACGAAGCTCAAAGAGAAGCCAACAAAATAATCGCAGACTACAAATACAAGCTGCAAAAGGCCGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCTCGATCAGAAACACAAGTTATACGATACAAGAGTACAGCTGAGGCTGCTGAAAAGGCAGAGGCCGAGTTAAAAATCGAACGGAGAAAGCTGCAACGAGAGAACCGCGAAGCCACGGAACGACTAGAAGAACTAGAAACATCTAACAATCACCTTCTCAAACGACTGGACAAATTAAAGAATGCCAAGAGCGCGCTCCTCAAGGAACTCTGA
- Protein Sequence
- MSEVLKPSNGLIYDQRNAEEDSTVLKSPPDYDEIGEEFHFSDSELSALDGDDNDAPKADAKVNTSSASDVCDNVSNRVAGKPASLNFDQTKDVQIDAFCPITPRKIMDCEEDGDKFTGENASNGYSSGDGLEDDSAEQDDEMIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLTASSVTGLVNSVRACSLSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESYSQLQREFKEKSRESNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENEDGSDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQIEVQNLQEQLENVKTQGRGRGNSMNGPLGSDDDYEAQREANKIIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- -
- 80% Identity
- -