Csor021533.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- lrrfip2
- Assembly
- GCA_948107745.1
- Location
- OX443563.1:102742038-102750005[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-116 1.1e-111 373.6 32.8 1 299 139 429 139 430 0.93 2 2 0.11 3.3e+03 -2.2 4.6 223 243 461 481 432 504 0.44
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTGAAACAATCTAATGGATTGATCTACGATCAACGCAACATGCAGGAGgagaataataattttaaaaaatcgccGGATTACGATGAAATCGGCGAAGAGTTCGATTTTAGTGATAGTGAACTAAATGCGTTAAACGGTGACGAAAGCGTTGATAAAGTGAATTCATGTGACGTGGTGTTGTGTGATACAGTGAAAAATGGGATTGTAACAAAGCCCGCAAATCTAAGCCTCGACCAGGCAAAGGAAGTACAAGTCGATGGATATTGTCCAATGACGCCGCGTAAAATTGTCGATTGCGGTGAGAACGGGTCACATGGATATAGCAGCGATGGGCTTGACGACGATGTGGCAGAGGAAGATGACGAGCTGATTGTACAGTTTTTAGGACAAGCTAATCAAATTGCTGAGGCGAGGCTGGCAGCAAGACGGCAGGCTCGTGCGGAAGCGCGAGAAATTCGCATGCGCGAATTGGAACGCCAACAAAAAGAACAAGAACAAAATGCTGATCGGGTATTCGATATGCAAACAGCAGCAGGTATTGATCCACTCGCTAGATCGCGTCTTACTGCGGCTAGCGTTACGGGTGTGGTCAATTCCGTACGTGCTAGTTCAATGTCATCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGGCGCAGTTTACGTGATATAAGGCATGAACTCAAGgatgTCGAGGAACGCTTTCGAAAGGCGATGATAGCCAATGCACAACTGGACAACGAACGAGCCTCGCAATCCTATCAAATTCAACTGCTCAAGGATAAACTCGAGGAAATGGAAGAATCATTTGCCCAGCTGCAGCGTGAATTCAAAGAAAAGTCGCGCGAATGCAATGCTCTCAAGCGTAACCTTGACAAATTGACAGAAGAGTTGAAGCTTGTTCATGGTCAGCTTAATGAACGGGATGCGCTAATAGCAGAACAGGGTTTGGTAATCGTAGCGGTAGAAAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGAGAATGCACAACTGTTAGGTTCAGTACAAGGTTCGCTGGATGTTCGACTCAAAAAGTTCAGCGAAGAGAAACAGCAACTCCAGGCCGAAGTATCAAACTTACAGGAACAATTAGAAAATGTTAAGACACAGGGTCGAGGCCGAGGCAATTCGATGAATGGCCCACTAGGATCTGATGATGACTATGAAGCTCAAAGAGAAGCCAACAAAATTATATCCGACTACAAATACAAACTGCAGAAGGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATATAAGAGTACAGCGGAAGCCGCTGAGAAAGCCGAGGCGGAACTGAAGATTGAGAGGAGAAAGCTTCAACGAGAGAATCGAGAGGCAACAGAGCGATTAGAGGAACTAGAAACATCTAATAATCACCTTTTGAAACGACTGGACAAATTAAAGAATGCAAAGAGTGCGCTCCTCAAAGAACTTTGA
- Protein Sequence
- MSEVLKQSNGLIYDQRNMQEENNNFKKSPDYDEIGEEFDFSDSELNALNGDESVDKVNSCDVVLCDTVKNGIVTKPANLSLDQAKEVQVDGYCPMTPRKIVDCGENGSHGYSSDGLDDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKSRECNALKRNLDKLTEELKLVHGQLNERDALIAEQGLVIVAVENEDGSDAKRALVTIENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVSNLQEQLENVKTQGRGRGNSMNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00312609; iTF_00315970; iTF_00314305; iTF_00311052; iTF_00315181; iTF_01253890; iTF_00311815; iTF_01522664; iTF_01521886; iTF_00310250; iTF_00724791; iTF_01300889; iTF_01300031; iTF_01541439; iTF_01542210;
- 80% Identity
- -