Xseg004881.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:2775088-2782182[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-114 2.9e-110 368.3 30.9 1 299 140 430 140 431 0.93 2 2 0.083 1.5e+03 -1.8 3.8 224 244 463 483 435 505 0.46
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTAAAACAATCCAATGGATTGATCTACAGCCATACCATGGAGGagaataataatttgaaaagcTCCCCGGATTATGATGAAATCGGTGAGGAATTCGATTTCAGTGATAGTGAACTAAGTGCGTTAAATGGTGATGATAGCACCGTCAAAGCTAATGATTCAAGTGACTCAGTGAATACGAGCAAAGGTGTCGCAACAAAGTTGGCGAATTTAAGCCTCGAACAGGCAAAGGAAGTGCAAGTCGATGCATTTTGTCCAATTACGCCGCGAAAAATCGTCGACTGTAAAGAAACCGCTGGAAGTGAAAACGCTTCAAATGGATATACCAGTGACGGCATGGACGACGATGTGGCAGATGAAGATGACGAGCTGATTGTACAATTTTTAGGACAAGCTAATCAAATTGCTGAAGCGAGGCTGGCAGCAAGACGGCTGGCACGTGCAGAAGCGCGGGAAATTCGCATGCGCGAATTGGAACGCCAGCAAAAAGAGCAAGAACAAAATGCCGATCGTGTATTCGATATGCAGACAGCAGCAGGTATTGATCCACTGGCTAGGTCGCGTCTTACCGCAGCCAGTGTTACCGGTGTGGTCAATTCTGTACGTGCTAGTTCGATGTCTTCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGGCGCAGCTTACGTGATATTAGGCATGAACTCAAGgATGTCGAAGAACGCTTTAGAAAAGCAATGATAGCCAATGCGCAGCTGGACAATGAAAGAGCCTCACAATCCTATCAAATTCAATTGCTCAAGGATAAACTCGAGGAAATGGAAGAATCATTTGCCCAGCTACAGCGTGAATTCAAAGAGAAGACACGCGAATGCAACGCTTTCAAGCGTAACCTTGACAAATTGACAGAAGAGTTGAAACTCGTTCATGGTCAGCTAACTGAACGAGATGCGCTTATAGCTGAACAGGGTTTGGTAATTGTAGCTGTAGAGAATGATGATGGCTCAGATGCCAAACGTGCTCTAGTCACTTTAGAGAATGCACAATTGTTAGGTTCTGTACAAGGTTCTTTGGATGTTCGACTTAAGAAATTTAGCGAAGAGAAACAGCAACTTCAAGCCGAAGTGCTAAATTTACAGGAACAATTAGAAAATGTTAAAACACAGGGACGAGGTCGAGGCAATTCAATGAACGGCCCAATGGGATCCGATGACGATTATGAAGCTCAAAGGGAAGCCAATAAAATCATCTCCGATTATAAATACAAACTGCAGAAGGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGTTATAAGAGTACCGCAGAGGCCGCTGAAAAAGCCGAGGCagatttgaaaattgaaaggaGGAAGCTTCAACGTGAGAATCGTGAAGCAATGGAACGACTAGAAGAACTAGAAACATCTAACAATCATCTATTAAAACGACTGGATAAATTAAAGAATGCTAAGAGTGCGCTCCTCAAAGAACTCTGA
- Protein Sequence
- MSEVLKQSNGLIYSHTMEENNNLKSSPDYDEIGEEFDFSDSELSALNGDDSTVKANDSSDSVNTSKGVATKLANLSLEQAKEVQVDAFCPITPRKIVDCKETAGSENASNGYTSDGMDDDVADEDDELIVQFLGQANQIAEARLAARRLARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKTRECNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENDDGSDAKRALVTLENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVLNLQEQLENVKTQGRGRGNSMNGPMGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00313474;
- 80% Identity
- -