Belo023740.1
Basic Information
- Insect
- Baccha elongata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951217065.1
- Location
- OX578272.1:2707024-2714111[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-113 1.3e-108 364.5 32.7 1 299 145 435 145 436 0.93 2 2 0.098 5.7e+03 -2.0 4.4 220 244 464 488 440 510 0.45
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGCTGAAACAATCGAATGGATTGATCtatgaaaaacaaatcaatgaagaaaataataataatttgagaAAATCTGCAGATTATGATGAAATCGGTGAAGAATTCGATTTTAGTGATAGTGAATTAATTGGTGACGAGAATGTTGTCAATTCAAATGACGCTTGTGATACTGATAACGTTGTTACCGTTGTCGGTAACGTGTCAAAACCCTCTAATCTAAATCTTGATCAAACAAAAGATGTTAAAATGGATGCATTTTGTCCAATTACACCGCGAAAAATTGTCGATTGTGAGGATAATGATAAATTCGTCGGTGAGAATGCTTCGAATGGATATACCAGCGATGGCGTACTCGAAGATGACGATGTGGCAGAAGAAGATGACGAGTTGATTGTACAATTTTTAGGACAAGCTAATCAAATTGCTGAAGCCAGACTGGCAGCCAGACGGCAGGCACGTGCTGAAGCACGGGAAATTCGCATGCGCGAATTGGAGCGCCAGCAAAAAGAACTGGAACAAAATGCCGATCGTGTATTCGATATGCAAACAGCAGCTGGTATTGATCCTCTAGCTAGATCGCGCCTCACTGCGGCTAGTGTCGCCGGAGTCGTTAATTCGGTACGTGCCAGCTCCATGTCATCCCGCAGAAGTAGTGAAGATTCCTTGGAAGAGGAGGGGCGCAGCTTACGTGATATTAGGCATGAACTCAAGgATGTCGAGGAACGTTTTCGAAAGGCAATGATAGCCAATGCACAGCTAGATAACGAAAGAGCCTCACAATCTTATCAAATTCAATTGCTTAAGGATAAGCTGGAAGAAATGGAAGAATCTTTCTCCCAGTTACAGCGTGAATTCAAAGATAAGACACGCGAAAGTAACGCTTTTAAACGAAACCTTGACAAATTGACAGAAGAACTAAAGCTTGTCCATGGTCAGCTGACTGAACGAGATGCGCTTATTGCCGAACAGGGTTTGGTCATTGTAGCCGTCGAAAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTTTAGAAAATGCACAATTGTTAGGATCTGTTCAGGGTTCTCTAGATGTTCGACTCAAAAAGTTTagtgaagaaaaaattcaaCTACAGGCCGAAGTGCAAAATTTACAGGACCAATTAGAAAATGTCAAGACACAGGGACGAGGACGGGGCAATTCAATGAATGGTACCCTTGGTTCCGATGAAGATTATGAAGCTCAAAGAGAAGCCAACAAGATCATCTCTGATTACAAATATAAATTGCAAAAAGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATATAAGAGTACTGCGGAAGCTGCTGAAAAAGCCGAAGCAGaattaaaaatcgaaaggaGAAAACTCCAACGAGAGAATCGTGAAGCAATGGAACGACTAGAAGAATTAGAAACGTCTAATAATCACCTTCTCAAACGACTGGATAAATTAAAGAACGCGAAGAGTGCACTTCTCAAAGAACTTTGA
- Protein Sequence
- MSEVLKQSNGLIYEKQINEENNNNLRKSADYDEIGEEFDFSDSELIGDENVVNSNDACDTDNVVTVVGNVSKPSNLNLDQTKDVKMDAFCPITPRKIVDCEDNDKFVGENASNGYTSDGVLEDDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLTAASVAGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFSQLQREFKDKTRESNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTLENAQLLGSVQGSLDVRLKKFSEEKIQLQAEVQNLQDQLENVKTQGRGRGNSMNGTLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- -
- 80% Identity
- -