Rros008541.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949824845.1
- Location
- OX463755.1:203315923-203329159[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-116 1.1e-111 373.6 31.7 1 299 143 433 143 434 0.93 2 2 0.097 2.9e+03 -2.0 4.4 220 244 462 486 438 508 0.45
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGCTAAAACAATCCAACGGATTGATCTATGATCATCATACCATGCAGGAGGAgaataataatttgaaaaagtcgTCACCAGATTACGATGAGGTCGGCGAGGAATTCGATTTCAGTGATAGTGAACTAAGTGCGTTAAACGGAGACGATAGTGTAGATACAGTGAATTTTAGTGACGTGGTGGTGCCGTGCGATACCGTGAATAATGGAATCGTATCGAAGCCCGCAAATCTAAGCCTTGACCAAGCGAAAGAGGTTCAAGTCGATGGATTTTGTCCAATGACGCCGCGAAAAATTGTCGACTGCGCCGGTGGTGAGAACGGTTCAAATGGATACAAAAGCGATGGAGCCGACGACGATGTGGCAGAAGAAGATGACGAGCTGATTGTACAATTTTTAGGACAAGCTAATCAAATTgCTGAAGCGAGGCTGGCAGCACGACGGCAGGCACGTGCAGAAGCGCGTGAAATTCGCATGCGCGAATTAGAGCGCCAACAAAAGGAGCAAGAACAGAATGCCGATCGTGTATTCGATATGCAAACAGCTGCCGGTATTGATCCCCTCGCTAGGTCGCGTCTTACCGCGGCTAGCGTTACGGGGGTGGTCAATTCAGTGCGAGCAAGTTCAATGTCATCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGGCGCAGCTTACGTGATATTAGGCATGAACTCAAGgACGTCGAGGAACGCTTCAGGAAGGCAATGATAGCCAATGCACAACTAGATAACGAACGAGCCTCGCAATCCTATCAAATTCAACTGCTTAAGGACAAACTCGAAGAAATGGAAGAGTCCTTTGCCCAACTGCAACGTGAATTCAAAGAGAAAACACGTGACTGCAATGCTCTAAAGCGCAACCTTGACAAATTAACGGAAGAGCTTAAGTTGGTCCATGGTCAGCTAAATGAACGGGATGCACTTATAGCTGAACAGGGTTTGGTAATTGTAGCGGTGGAAAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGAGAATGCACAATTGTTGGGCTCGGTACAAGGATCGTTAGATGTTCGACTTAAAAAGTTCACCGAAGAGAAACAACAACTTCAGGCCGAGGTGGCAAATCTTCAGGAACAATTAGACAATGTTAAGACACAGGGACGAGGTCGGGGCAATTCAATGAACGGCCCACTTGGATCTGATGATGACTATGAAGCTCAACgAGAAGCCAATAAAATTATCTCCGACTACAAATACAAACTTCAGAAGGCCGAACAGGAAATCGCTAGTCTACAAGCCAGTTTAGCTAGATCAGAAACACAAGTTATACGATATAAGAGTACAGCGGAAGCAGCTGAGAAAGCCGAGGCTGAGTTGAAGATCGAAAGGAGAAAACTTCAGCGAGAGaaCCGTGAAGCAATGGAACGCCTTGAAGAACTAGAAACGTCAAACAATCACCTTTTAAAACGACTGGACAAATTAAAGAATGCCAAGAGCGCGCTTCTCAAAGAACTCTGA
- Protein Sequence
- MSEVLKQSNGLIYDHHTMQEENNNLKKSSPDYDEVGEEFDFSDSELSALNGDDSVDTVNFSDVVVPCDTVNNGIVSKPANLSLDQAKEVQVDGFCPMTPRKIVDCAGGENGSNGYKSDGADDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKTRDCNALKRNLDKLTEELKLVHGQLNERDALIAEQGLVIVAVENEDGSDAKRALVTIENAQLLGSVQGSLDVRLKKFTEEKQQLQAEVANLQEQLDNVKTQGRGRGNSMNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00313474;
- 80% Identity
- -