Fcup009106.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963576555.1
- Location
- OY754958.1:170987069-170999757[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-116 1.8e-111 373.1 33.1 1 299 142 432 142 433 0.93 2 2 0.063 2.1e+03 -1.4 3.9 215 244 457 485 434 507 0.48
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTGAAACAATCCAATGGATTGATCTATGATCAGCATAGTGCGAAGGAGGagaataataatttgaaaaagTCACCGGATTATGATGAAATTGGCGAAGAGTTCGATTTTAGTGATAGTGAATTAAGTGCGTTAAACGGTGACGACAGTGTTGACAAAGTGAGTGACGTTGGTGACGTGACTGTTGCCGTCGCCAATACAGTAAATAACGGAGTCGTATCGAAGCCCGCAAATCTAAATCTCGATCAAGCTAGGGCAGTCGCCACCGTTGGATTTTGTCCAATGACACCGCGCAAAATTGTTGACAGCGGTGAGAATGCTTCAAATGGATATAGCAGCGATGGTCTGGACGACGATGTGGCAGAAGAAGATGATGAGCTGATTGTACAATTTTTAGGACAGGCCAATCAAATTgcTGAAGCGAGGCTGGCAGCAAGACGGCAGGCACGTGCAGAAGCGCGGGAAATTCGCATGCGCGAATTGGAACGCcaacaaaaagaacaagaacaaaatgCTGATCGGGTCTTTGATATGCAAACAGCGGCAGGAATTGATCCTCTCGCCAGGTCACGTCTTACAGCGGCCAGTGTTGCGGGCGTTGTCAATTCCGTGCGTGCAAGTTCGATGTCATCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGACGCAGCTTACGTGATATTAGGCATGAACTCAAGGACGTTGAGGAACGCTTTCGGAAAGCGATGATAGCCAATGCACAGTTGGATAACGAACGAGCCTCACAATCCTATCAAATTCAACTGCTCAAGGATAAACTCGAGGAAATGGAAGAATCATTTGCCCAGCTGCAGcgtgaattcaaagaaaaaacacGCGAATGTAATGCCTTGAAGCGAAATCTTGACAAATTATCGGAAGAGTTAAAGCTGGTTCAGGGTCAACTAACCGAACGTGATGCGCTCATAGCTGAACAGGGTTTGGTAATTGTAGCGGTAGAAAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGAGAATGCACAATTGTTAGGTTCTGTCCAAGGTTCGCTGGATGTTCGACTTAAGAAATTTAGCGAAGAGAAACAGCAACTTCAAGCCGAAGTCGCAAACTTACAGGAACAGctagaaaatgttaaaacacAGGGACGAGGACGAGGCAACTCGACAAACGGCCCTCTAGGATCCGATGATGACTACGAAGCTCAAAGAGAAGCCAACAAAATTATATCCGACTACAAATACAAACTGCAGAAGGCTGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGGTATAAGAGTACAGCGGAAGCGGCTGAGAAAGCCGAGTCTGAGCTGAAGATTGAAAGGAGAAAGCTTCAGCGAGAGAACCGTGAAGCAACTGAGCGATTAGAGGAACTAGAAACATCTAATAATCACCTTTTAAAACGACTGGACAAATTAAAGAATGCCAAGAGTGCGCTTCTCAAAGATCTTTGA
- Protein Sequence
- MSEVLKQSNGLIYDQHSAKEENNNLKKSPDYDEIGEEFDFSDSELSALNGDDSVDKVSDVGDVTVAVANTVNNGVVSKPANLNLDQARAVATVGFCPMTPRKIVDSGENASNGYSSDGLDDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVAGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKTRECNALKRNLDKLSEELKLVQGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTIENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVANLQEQLENVKTQGRGRGNSTNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00313474;
- 80% Identity
- -