Mqua042131.1
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949320155.1
- Location
- OX439484.1:5983923-5995248[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-114 6.2e-109 366.1 32.3 1 299 165 455 165 456 0.93 2 2 0.1 8.3e+03 -2.1 4.2 136 153 491 508 458 530 0.43
Sequence Information
- Coding Sequence
- ATGTCAGAAGTGATAAAACAATCCAACGGATTGATCTATGAAAAACACAATAATGagcagaataataataatagtttaaGTAAAGCCGAAGATTATGACGAAATCGGTGAAGAATTCGATTTTAGTGATAGTGAATTAATTGATGACACCATCAGTGCTGTCAAACCtgattataataaaatgaatGTGAATGACGTTTGTGACGTCACTGTGAATAATGGTGTTACCATTGTTGATATCGGTATGTCAAAACCGCCAAATCTAAATCTAGAACAATCGAATGAAGTTCAAATGGATGCGTTCTGCCCAATAACTCCGCTTAAAATTTTCGACTGTGAGGAGAGTAATAAATCCACCAACGGCACTGGTGGTGAGAATACTACGAACAGGCATAACAGTGGTGAGCTGGAAGAAGGCGACGACGACGTTGATGATGTAGCAGAAGAAGATGACGAATTGATTGTACAATTTTTAGGACAAGCTAATCAAATTgctGAAGCAAGACTGGCAGCCAGACGGCAGGCACGTGCCGAAGCACGGGAAATTCGCATGCGCGAATTGGAACGCCAGCAAAAAGAACTGGAACAAAATGCTGATCGAGTATTCGATATGCAAACAGCAGCCGGTATTGATCCTCTGGCTAGATCGCGTCTTAATGCATCTAGCGTCACCGGAGTGGTTAATTCGGTGCGTGCCAGTTCAATGTCCTCCCGCAGAAGTAGTGAAGATTCCCTTGAAGAGGAAGGACGCAGTTTACGTGATATAAGGCATGAACTCAAGGATGTGGAGGAACGTTTTCGAAAAGCAATGATAGCCAATGCACAACTAGACAACGAACGAGCCTCGCAATCTTATCAAATTCAATTGCTCAAGGATAAACTGGAAGAAATGGAAGAATCTTTTTCCCAGCTACAGCGTGAATTCAAAGAGAAAACACGTGAATGTAACGCTTTTAAGCGTAACCTTGATAAATTGACAGAAGAACTGAAGCTTGTCCATGGCCAGCTGACTGAACGAGATGCGCTTATTGCCGAGCAGGGTTTGGTTATTGTAGCTGTCGAAAACGAGGATGGCTCTGATGCCAGACGTGCTCTAGTCACTTTAGAAAATGCACAATTGTTAGGATCTGTTCAAGGTTCTCTAGACGTTCGACTTAAAAAATTCAGCgaagaaaaaattcaacttcAGGCTGAAGTGCAAAACTTACAGGACCAATTAGAAAACGTCAAGACCCAAGGACGAGGACGGGGTAATTCAATGAATGGTACACTTGGTTCTGATGAAGATTATGAAGctcaaagggaagccaacaaaataatttctgaCTACAAATATAAATTGCAAAAAGCCGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATATAAAAGTACAGCGGAAGCTGCTGAAAAATCCGAAGCAGAGTTAAAAATCGAAAGAAGAAAACTTCAACGAGAGAACCGTGAAGCAACGGAACGACTAGAAGAACTAGAAACATCTAATAATCACCTTCTTAAGCGACTGGACAAATTAAAGAACGCCAAGAGTGCTCTTCTAAAAGAACTCTGA
- Protein Sequence
- MSEVIKQSNGLIYEKHNNEQNNNNSLSKAEDYDEIGEEFDFSDSELIDDTISAVKPDYNKMNVNDVCDVTVNNGVTIVDIGMSKPPNLNLEQSNEVQMDAFCPITPLKIFDCEESNKSTNGTGGENTTNRHNSGELEEGDDDVDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLNASSVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFSQLQREFKEKTRECNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENEDGSDARRALVTLENAQLLGSVQGSLDVRLKKFSEEKIQLQAEVQNLQDQLENVKTQGRGRGNSMNGTLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKSEAELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00664072;
- 80% Identity
- -