Pper022227.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:3846037-3856672[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-116 2e-111 373.8 32.7 1 299 149 439 149 440 0.93 2 2 0.12 6.9e+03 -2.3 4.6 223 243 471 491 442 514 0.44
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTAAAACAATCCAATGGATTGATCTATGATCAACACATCGCGGAGGAGGagaataataatttgaaaaattcaccGGATTATGATGAAATCGGTGAGGAATTCGATTTCAGTGATAATGAACTAAGTGCGTTAAATAATGGTGACGATAGTGTCGCCAAAGCTGATAAAGTAGTGAATTCGAGTGATGAGTGTGATAATAAAGGTGTCATAGCTAAGCCCGCAAATCTAAGCCTCGAGCAGGCGAAAGAGGTTCAAGTCGATGCATTCTGTCCAATTACGCCGCGAAAAATTGTCGACTGTAAGGAGAACGATAAGTTTACCGGTGGCAGTGAAAACGCTTCAAATGGATACGCCAGCGATGGAATGGAAGACGATGTGGCAGAAGAAGATGACGAGCTGATTGTACAATTTTTAGGACAAGCGAATCAAATTGCTGAAGCGAGGCTGGCAGCAAGACGGCAAGCACGTGCAGAAGCGCGAGAAATTCGCATGCGCGAATTGGAACGCCAGCAAAAAGAGCAAGAACAAAATGCCGATCGGGTATTCGATATGCAAACAGCAGCAGGTATTGATCCCCTTGCTAGGTCGCGTCTTACCGCGGCCAGTGTCACTGGTGTGGTCAATTCTGTTCGTGCTAGTTCGATGTCTTCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGACGCAGCTTACGTGATATAAGGCATGAACTCAAGGATGTCGAGGAACGCTTTAGAAAGGCAATGATAGCCAATGCACAGTTGGATAATGAAAGAGCGTCGCAATCCTATCAAATTCAACTGCTCAAGGATAAACTGGAGGAAATGGAAGAATCATTTGCCCAGCTACAGCGTGAGTTCAAAGAGAAAACACGCGAATGCAATGCTCTCAAGCGTAACCTTGACAAATTGACGGAAGAGTTGAAGCTCGTTCATGGTCAGTTAACTGAACGAGATGCGCTTATAGCTGAACAGGGTTTGGTAATTGTCGCGGTAGAGAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGAGAATGCACAATTGTTGGGTTCTGTACAAGGTTCTTTGGATGTTCGACTTAAGAAGTTCAGCGAAGAGAAACAGCAACTTCAAGCTGAAGTGCAAAATTTACAGGAACAATTAGAAAATGTTAAGACACAGGGACGAGGTCGGGGTAATTCAATGAACGGCCCAATAGGATCTGATGACGATTATGAAGCTCAAAGGGAAGCAAACAAGATCATCTCCGATTACAAATACAAACTGCAAAAGGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACTCAAGTTATACGATATAAAAGTACAGCGGAAGCCGCTGAAAAAGCCGAGGCAGAGTTGAAAATCGAAAGGAGGAAGCTTCAACGAGAGAATCGCGAAGCAACGGAACGACTAGAAGAACTAGAAACATCTAATAATCACCTTCTAAAACGACTGGATAAATTAAAGAATGCTAAAAGTGCGCTCCTCAAAGAACTTTGA
- Protein Sequence
- MSEVLKQSNGLIYDQHIAEEENNNLKNSPDYDEIGEEFDFSDNELSALNNGDDSVAKADKVVNSSDECDNKGVIAKPANLSLEQAKEVQVDAFCPITPRKIVDCKENDKFTGGSENASNGYASDGMEDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKTRECNALKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTIENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQNLQEQLENVKTQGRGRGNSMNGPIGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00389620;
- 80% Identity
- -