Pmac033997.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:7649618-7663166[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-116 4.9e-111 373.4 32.5 1 299 139 429 139 430 0.93 2 2 0.096 1.1e+04 -2.0 4.4 220 244 458 482 434 504 0.45
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTAAAACAATCCAATGGACTGATCTATGATCAGCACATTGCGAAAGAGGAgaataataattcaaaaaaatcaCCGGATTATGATGAAATCGGCGAAGAGTTCGACTTCAGTGATAGTGAACTAAGTGCGTTAAACGTCGGCGACAGTGTTGATAAAGTGAATTCTGGTGACGTGATAGTATGTGATACGGTTAATAACGAGGTCGCGTCGAAGCCTGCAAATCTTAAAATCGACCAAGCgaaagaagtccaaatcgatggATCTTGTCAAATGACACCGGGCGAAATTGTTGACGGTAGTGGGAACGCTTCAAATGGATATACCAGCGATGGACTGGATGACGATGTGGCAGAAGAAGATGACGAGCTGATTGTACAATTTTTAGGACAAGCCAATCAAATTgcTGAAGCGAGACTGGCAGCCAGACGGCAGGCACGTGCAGAAGCGCGAGAAATTCGTATGCGCGAATTGGAACGCCAACAAAAAGAACTGGAACAAAATGCCGATCGAGTATTTGATATGCAAACGGCGGCTGGTATTGATCCTATCGCTAGGTCTCGCCTTACAGCGGCCAGTGTTACGGGAGTGGTCAATTCCGTGCGCGCTAGTTCGATGTCATCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGACGCAGCTTACGTGATATTAGGCATGAACTCAAGGATGTCGAGGAACGCTTTCGGAAGGCGATGATAGCCAATGCACAATTGGATAACGAACGAGCCTCGCAGTCGTATCAAATTCAACTGCTCAAGGATAAACTCGAGGAAATGGAAGAATCATTTTCCCAGCTGCAGCGTGAATTCAAAGAGAAAACACGCGAATGTAATGCACTGAAGCGTAACCTTGACAAATTATCTGAAGAGCTGAAACTGGTTCAAGGGCAGCTTACTGAACGCGATGCGCTTATAGCTGAACAGGGTTTAGTAATTGTAGCGGTGGAAAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGAGAATGCACAATTGTTAGGTTCCGTACAAGGATCGCTGGATGTTCGACTCAAAAAATTCAGCGAAGAGAAACAGCAACTTCAAGCCGAAGTAGCGAATTTACAGGAACAGCTAGAGAATGCTAAAACACAGGGGCGAGGCAAAGGCAGCTCGACAAACGGCCCATTAGGATCTGATGATGACTACGAAGCTCAAAGAGAAGCCAACAAAATTATCTCCGATTACAAATACAAACTGCAGAAGGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGTTATAAGAGTACAGCGGAAGCCGCTGAAAAAGCCGAGGCCGAACTGAAGATCGAAAGGAGAAAGCTTCAGCGCGAGAACCGCGAAGCAATGGAGCGATTAGAGGAACTAGAAACATCTAACAATCACCTTCTAAAACGACTGGACAAATTAAAGAATGCAAAAAGTGCGCTCCTCAAAGAACTCTGA
- Protein Sequence
- MSEVLKQSNGLIYDQHIAKEENNNSKKSPDYDEIGEEFDFSDSELSALNVGDSVDKVNSGDVIVCDTVNNEVASKPANLKIDQAKEVQIDGSCQMTPGEIVDGSGNASNGYTSDGLDDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPIARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFSQLQREFKEKTRECNALKRNLDKLSEELKLVQGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTIENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVANLQEQLENAKTQGRGKGSSTNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00313474;
- 80% Identity
- -