Cvar017650.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951230905.1
- Location
- OX579677.1:56593143-56599608[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-115 8.6e-111 370.9 32.0 1 299 139 429 139 430 0.93 2 2 0.11 3.7e+03 -2.2 4.6 223 243 461 481 432 504 0.44
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTGAAACAATCCAATGGATTGATCTATGATCAACGCAACACGCAGGAGGAGAATAACAATTTGAAAAAGTCACCGGACTACGATGAGATCGGCGAGGAGTTCGATTTCAGTGATAGTGAACTGAATGCGTTAAACGGTGACGACAGCGTTGATAAAGTGAATTCTAGTGACGTGGTAGTGTGTGATACAGTGAATAATGGGGTCGTCACAAAGCCCGCAAATCTTAGCCTCGATCAGGCAAAGGAAGTCCAAGTCGATGGATATTGTCCAATGACACCGCGAAAAATTATCGACTGCGGTGAAAACGGCTCGCATGGATATAACAGCGATGGAACCAACGACGATGTGGCAGAGCAAGATGACGAGCTGATTGTACAATTTTTAGGACAAGCTAATCAAATTGCTGAGGCGAGGCTGGCAGCAAGACGGCAGGCTCGTGCAGAAGCGCGAGAAATTCGCATGCGCGAATTGGAACGCCAACAAAAAGAACAAGAACAAAATGCCGATCGGGTATTCGATATGCAAACAGCGGCAGGCATTGATCCACTGGCCAGGTCGCGTCTTACTGCGGCCAGCGTTACGGGCGTGGTCAATTCCGTACGTGCTAGTTCGATGTCATCCCGCCGAAGCAGTGAAGATTCCCTGGAGGAGGAAGGGCGCAGCTTACGTGATATAAGGCATGAACTCAAGGATGTCGAGGAACGCTTTCGAAAGGCGATGATAGCCAATGCACAGCTGGATAACGAACGAGCCTCGCAATCCTATCAAATTCAACTGCTCAAGGATAAACTCGAGGAAATGGAAGAATCTTTTGCCCAGCTGCAGCGTGAATTCAAAGAAAAGTCACGCGAATGCAATGCTCTCAAGCGTAACCTTGACAAATTGACAGACGAGCTAAAACTTGTCCATGGTCAGCTAAATGAACGGGATGCGCTTATAGCTGAACAGGGCTTGGTTATTTTAGCGGTGGAAAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGAGAATGCACAACTGTTAGGTTCGGTACAAGGCTCACTGGATGTTCGACTCAAAAAGTTCAGCGAAGAGAAACAGCAACTTCAGGCCGAAGTAGCAAATCTACAGGACCAATTAGAAAATGTTAAGACACAGGGACGAGGTCGGGGCAATTCGATGAATGGCCCACTAGGATCAGATGATGACTATGAAGCTCAAAGAGAAGCCAACAAAATTATCTCCGACTACAAATACAAACTGCAGAAGGCCGAACAAGAAATCGCTAGTCTACAGGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATATAAGAGTACAGCGGAAGCTGCAGAGAAAGCCGAAGCGGAACTGAAAATCGAGAGGAGAAAGCTTCAACGAGAGAATCGAGAGGCAACGGAGCGATTAGAAGAACTAGAAACATCTAATAATCACCTTTTGAAACGACTGGACAAATTAAAGAATGCAAAGAGTGCGCTCCTCAAAGAACTTTGA
- Protein Sequence
- MSEVLKQSNGLIYDQRNTQEENNNLKKSPDYDEIGEEFDFSDSELNALNGDDSVDKVNSSDVVVCDTVNNGVVTKPANLSLDQAKEVQVDGYCPMTPRKIIDCGENGSHGYNSDGTNDDVAEQDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKSRECNALKRNLDKLTDELKLVHGQLNERDALIAEQGLVILAVENEDGSDAKRALVTIENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVANLQDQLENVKTQGRGRGNSMNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00313474;
- 80% Identity
- -