Pros025620.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963971375.1
- Location
- OZ020508.1:5289991-5309172[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-113 6.9e-109 365.4 31.7 1 299 138 428 138 429 0.92 2 2 0.11 6.3e+03 -2.2 4.6 223 243 460 480 431 503 0.44
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGATAACACAATCCAATGGATTAATCTATGATAAACAAAAGagtgaagaaaataataatgatttgaGAAAATCCGCGGATTATGACGAAATCGGTGAAGAGTTCGATTTCAGTGACGTTGAATTGAGTGGTGATGACAGTACTGTCAAACCTGATAAAATGAATTCAAGTGACGTCGCAGTGCGTGGCATATCCAAACCCTCAGATTTAAGTCTTCTGCAAGCAAAGGACATCCAAATGGATCCATTCTGTCCCATAACGCCGCGTAAAATTGTCGATTGCGCGGAGGGCGACAAATTCGCCAGCGAAACCCCCTCGAATGGAAATGCCAGTGAAGATGACGATGTGGCGGAAGAAGATGACGAGTTGATTGTACAATTTTTAGGACAAGCTAATCAAATTGCTGAAGCAAGACTGGCAGCCAGGCGGCAGGCACGTGCCGAAGCACGAGAAATCCGCATGCGTGAACTGGAACGCCAGCAAAAGGAGCTCGAGCAAAATGCCGATCGCGTATTCGATATGCAGACAGCAGCCGGCATTGATCCACTGGCTAGGTCGCGTCTCACCGCAGCCAGTGTCACCGGAGCGGTCAATTCAGTACGTGCCAGTTCCATGTCCTCCCGCAGAAGTAGTGAAGATTCGCTGGAAGAAGAAGGACGCAGCTTACGTGATATTAGGCATGAACTCAAGGATGTCGAGGAGCGTTTTCGAAAGGCAATGATAGCCAATGCACAACTAGACAACGAACGAGCCTCACAATCTTATCAAATTCAATTGCTCAAGGACAAACTGGAAGAAATAGAAGAGTCATTCTCGCAGCTTCAGCGGGAATTCAAAGAGAAGACACGCGAATGTAACGCTTTCAAGCGCAACCTTGACAAATTGACAGAAGAACTGAAGCTTGTTCATGGCCAGCTGACTGAACGAGATGCGCTTATTGCCGAACAGGGTTTGGTCATTGTAGCTGTCGAAAATGAGGATGGCTCAGATGCGAAACGTGCTCTAGTCACTTTAGAAAATGCACAATTGTTAGGATCTGTTCAGGGTTCTCTAGATGTTCGACTTAAAAAATTCAGCGAAGAGAAAATTCAACTTCAAACCGAAGTGCAAAATTTACAGGATCAATTAGAAAATGTCAAGACCCAAGGACGAGGACGGGGTAACTCAATGAATGGCACCCTTGGTTCCGATGATGATTATGAGGCCCAAAgagaaGCCAACAAGATCATCTctgattataaatataaattgcaaAAGGCCGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATACAAAAGTACAGCGGAAGCTGCTGAAAAAGCCGAAGCTGAGTTGAAAATCGAGAGGAGAAAGCTCCAACGAGAGAACCGTGAAGCAACGGAACGACTAGAAGAACTAGAAACATCTAATAATCACCTTCTAAAACGATTGGATAAATTAAAGAATGCCAAGAGTGCGCTTCTCAAAGAACTTTGA
- Protein Sequence
- MSEVITQSNGLIYDKQKSEENNNDLRKSADYDEIGEEFDFSDVELSGDDSTVKPDKMNSSDVAVRGISKPSDLSLLQAKDIQMDPFCPITPRKIVDCAEGDKFASETPSNGNASEDDDVAEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLTAASVTGAVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEIEESFSQLQREFKEKTRECNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTLENAQLLGSVQGSLDVRLKKFSEEKIQLQTEVQNLQDQLENVKTQGRGRGNSMNGTLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- -
- 80% Identity
- -