Xsyl009239.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220385.1
- Location
- LR999957.1:149910974-149918490[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-114 4.6e-110 368.2 30.9 1 299 146 436 146 437 0.93 2 2 0.084 2.3e+03 -1.8 3.8 224 244 469 489 441 511 0.46
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTGAAACAATCCAATGGATTGATCTACAACCATACAATGGAGGAgaataataatttgaaaagcTCCCCGGATTATGATGAAATCGGTGAGGAATTCGATTTCAGTGATAGTGAACTAAGTGCGTTAAATGGTGATGATACCACCACCAAAGCTAATGATTCAAGTGATGTGTGTGATGCAGTGAGTACGAGTAAAGGTGTCACAACAAAGCCGGCAAATCTAAGCCTCGAGCAGGCAAAGGAAGTGCAAGTTGATGCATTTTGTCCAATTACGCCGCGAAAAATCGTCGACTGTAAAGAGAGCGATAAGCTAACCGGTGGCACTGAGGACGCTTCAAATGGATATACCAGTGACGGCATGGAAGACGATCTTTCAGAAGATGACAACATAATTGTACAATTTTTAGGACAAGCTAATCCAATTGCTGAAGCGAGGCTGGCAGCAAGACGTCTGGCACGTGCAGAAGCGCGGGAAATTCGCATGCGCGAATTGGAACGCCAGCAAAAAGAGCAAGAACAAAATGCCGATCGTGTATTCGACATGCAGACAGCAGCAGGCATTGATCCCCTGGCTAGGTCGCGTCTTACAGCCGCTAGTGTTACCGGCGTGGTCAATTCTGTACGTGCTAGTTCGATGTCTTCCCGCCGAAGTAGTGAAGACTCGCTGGAAGAGGAAGGGCGCAGCTTACGTGATATTAGGCATGAACTCAAGGATGTCGAAGAACGCTTTAGAAAAGCAATGATAGCCAATGCGCAGCTGGACAATGAAAGAGCCTCACAATCCTATCAAATTCAATTGCTCAAGGATAAACTCGAGGAAATGGAAGAATCATTTGCCCAGCTACAGCGTGAATTCAAAGAGAAGACACGCGAATGCAATGCTTTCAAGCGTAACCTTGACAAATTGACAGAAGAGTTGAAACTCGTTCATGGTCAGTTGACTGAACGAGATGCGCTTATAGCTGAACAGGGTTTGGTAATTGTAGCTGTAGAGAATGATGATGGCTCAGATGCCAAACGTGCTCTAGTCACTTTAGAGAATGCACAATTGTTAGGTTCTGTACAAGGTTCTTTGGACGTTCGACTTAAAAAGTTTAGCGAAGAGAAACAGCAACTTCAAGCCGAAGTGCTAAATTTACAGGAACAATtagaaaatgtcaaaacacaggGACGAGGACGGGGCAATTCAATGAACGGCCCAATGGGATCCGATGACGATTATGAAGCTCAAAGGGAAGCCAATAAAATTATCTCCGATTACAAATACAAACTGCAGAAGGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCAAGATCAGAAACACAAGTTATACGTTATAAGAGTACCGCAGAAGCCGCTGAAAAGGCCGAGGCAGATTTGAAGATCGAAAGGAGGAAGCTTCAACGAGAGAATCGTGAAGCAATGGAACGACTAGAAGAACTAGAAACATCTAATAATCATCTTTTAAAACGACTGGATAAATTAAAGAATGCTAAGAGTGCGCTCCTCAAAGAACTTTGA
- Protein Sequence
- MSEVLKQSNGLIYNHTMEENNNLKSSPDYDEIGEEFDFSDSELSALNGDDTTTKANDSSDVCDAVSTSKGVTTKPANLSLEQAKEVQVDAFCPITPRKIVDCKESDKLTGGTEDASNGYTSDGMEDDLSEDDNIIVQFLGQANPIAEARLAARRLARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREFKEKTRECNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENDDGSDAKRALVTLENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVLNLQEQLENVKTQGRGRGNSMNGPMGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- iTF_00313474;
- 80% Identity
- -