Spip008036.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:2729661-2740946[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-114 9.2e-110 366.7 32.8 1 299 152 442 152 443 0.92 2 2 0.099 1.9e+03 -2.1 4.4 220 244 471 495 447 517 0.45
Sequence Information
- Coding Sequence
- ATGTCGGAAGTGTTAAATCACAGCAACGGATTGATCTACGATCAATACAACGTGGAAGAAAACAATAATAATAATAATAATTCGAAAAACTCCGCGGAATATGATGAAATCGGTGAGGAATTCGATTTCGGTGACAGTGAATTGAGTGCGTTAAACGGTGACGATAATGTTATTGCCTCCGCCAACAGAACTGATAACATGAACTCAAGTGATGTGTGTGATAATGCGAATGGGGTCGTGACAAAACCCCCAAACCTAAGTCTCGATCAGGCGAAGGAAGTCAAAGTGGATGCGTTCTGTCCGATTACCCCGCGAAAAATAATCGACTCAAAAGAGGATGACAAACATACCGGTGGCGAGAATGGCTCATCACATGGATATACCAGTGACGATCTGGCCGAGGAGGAGGATGACGAACTGATTGTACAGTTTCTGGGACAAGCTAATCCAATTGCTGAAGCGAGACTGGCAGCGAGACGGCAAGCGCGTGCAGAAGCGCGAGAAATTCGCATGCGCGAATTGGAACGCCAGCAAAAAGAACAAGAACAAAATGCCGATAGGGTGTTTGATATGCAAACAGCAGCAGGCATTGATCCGCTCGCTAGGTCACGAATTACAACATGCAGTGCAACAGCATTGGCTAATTCCATCCGTGCGAACTCGATGTCTTCCCGCCGAAGCAGTGAAGATTCCTTGGAGGAGGAAGGCCGCAGTTTACGTGATATTAGGCTTGAACTTAAGGATGTTGAAGAACGCTTTAGGAAGGCAATGATAGCCAATGCACAATTAGATAACGAACGAGCCTCACAGTCCTATCAAATTCAGTTGCTCAAGGACAAACTCGAAGAAATGGAAGAATCATTTTCCCAGCTACAGCGTGAATTCAAAGAGAAAACTCGTGAATGTAACGCTTTTAAGCGAAACCTTGACAAATTAACCGAAGAGTTGAAGCTTGTCCATGGACAACTGACTGAACGTGATGCGCTTATAGCTGAACAGGGTTTGGTCATTGTTGCGGTAGAGAATGAGGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGAGAATGCACAATTGTTAGGATCTGTACAGGGTTCTCTTGATGTTCGACTCAAGAAGTTTAGCGAAGAAAAACAACAGCTTCAGGCTGAAGTTCAAAACTTACAGGAACAATTAGAAAATGTTAAAACACAGGGACGAGGTCGGGGCAACTCAATGAACGGTCCGCTCGGGTCCGATGACGATTATGAAGCTCAAAGAGAAGCAAATAAGATTATCTCCGATTATAAATATAAACTGCAAAAGGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATATAAGAGTACAGCGGAAGCAGCTGAAAAGGCCGAGGCAGAGTTAAAAATTGAAAGGAGAAAACTTCAGCGAGAGAATCGTGAAGCAATGGAACGACTAGAAGAACTAGAAACATCTAATAATCATCTTTTAAAACGACTGGACAAATTAAAGAATGCCAAAAGTGCGCTACTCAAAGAACTTTGA
- Protein Sequence
- MSEVLNHSNGLIYDQYNVEENNNNNNNSKNSAEYDEIGEEFDFGDSELSALNGDDNVIASANRTDNMNSSDVCDNANGVVTKPPNLSLDQAKEVKVDAFCPITPRKIIDSKEDDKHTGGENGSSHGYTSDDLAEEEDDELIVQFLGQANPIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRITTCSATALANSIRANSMSSRRSSEDSLEEEGRSLRDIRLELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFSQLQREFKEKTRECNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTIENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQNLQEQLENVKTQGRGRGNSMNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315970;
- 90% Identity
- -
- 80% Identity
- -