Pcas016458.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polylopha cassiicola
Gene Symbol
-
Assembly
GCA_038024825.1
Location
CP149058.1:5294162-5307222[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00014 0.0077 17.0 0.1 3 23 160 180 159 180 0.97
2 19 1.2e-06 7e-05 23.4 1.2 1 23 186 208 186 208 0.99
3 19 7.7e-06 0.00044 20.9 2.7 1 23 214 236 214 236 0.99
4 19 2.8e-05 0.0016 19.2 1.3 1 23 251 273 251 273 0.98
5 19 8.7e-05 0.005 17.6 0.9 1 23 322 344 322 344 0.98
6 19 7e-05 0.004 17.9 3.1 1 23 359 381 359 381 0.98
7 19 4.9e-07 2.8e-05 24.7 1.5 1 23 396 418 396 418 0.99
8 19 0.00022 0.012 16.4 2.8 1 23 424 446 424 446 0.98
9 19 6e-05 0.0034 18.1 0.1 1 23 453 475 453 475 0.99
10 19 1.5e-05 0.00087 20.0 2.1 1 23 481 503 481 503 0.99
11 19 0.05 2.8 9.0 1.8 1 23 510 532 510 532 0.98
12 19 8.3e-07 4.7e-05 24.0 2.3 1 23 538 560 538 560 0.99
13 19 0.057 3.3 8.8 1.8 1 23 567 589 567 589 0.98
14 19 3.4e-06 0.00019 22.1 1.5 1 23 595 617 595 617 0.99
15 19 0.00064 0.037 14.9 0.7 1 23 624 646 624 646 0.99
16 19 3.7e-06 0.00021 21.9 1.9 1 23 652 674 652 674 0.98
17 19 0.0027 0.16 12.9 0.3 1 20 680 699 680 702 0.93
18 19 5.3e-05 0.003 18.3 1.4 2 23 709 730 708 730 0.96
19 19 4.8e-06 0.00027 21.6 1.4 1 23 736 759 736 759 0.97

Sequence Information

Coding Sequence
ATGGCCGGGGGGGAGGCTGGGTGGAGACAGTCGGTCGAATGGAGGAGCACTCTCGGATTCGCCATTAGTTTCCCGGCACACTGGGGCGTGGGCGTCGGGGGTGTGGCGCGGGGCGTTGGAGTCCCCGTGCCACCCCCCGGCGACCTCCTCGCCACGATCTCCATGTTCGAGCAGCAGATCAAGGCTGAACCTATGAGCTTTTACTCCTCCCACGCCCACGTCCATTCTGGTCCCCCCACAATAGTTCGGTCAGACTCCAACCATGCCATAATCAACATGAACCAACACCACCCCGAGGACTCCAAGGACAGCCTTATAGTACAACAACAAGTTCAACATCAGCAGGATCTGATGGAACAGCACCAGCAGCAAGATATGCAACAAGATGATGAGggCATGGGTGTGGACTTGGGATCAGTTCAGACGAAAATGGAGTCAAATGGGGGTGGATCTACTCCTCGATCAAAGCCACAAGCTTGTAAGGTTTGTGGTAAAGTTTTGTCGTCTGCTTCATCATACTACGTCCATATGAAGCTGCATTCTGGAAACAAGCCCTTTCAATGCACGGTTTGCGACGCCGCTTTTTGCCGTAAACCGTACTTGGAAGTACACATGCGCACACACACGGGCGAACGGCCTTTCCAGTGCGATCTCTGTCTCAAACGGTTCACACAGAAATCCAGCCTCAATACGCACAAACGCGTCCACACCGATGAACACATGCGCGCCTTGATCGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTGCCGTCAGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGGTGGGTTGTTTTCCTCGCCCACATTTTACCCCCCATACGACACCCTCGACTCCTATCCAAAATCCATCGCGACCGCTCGCTCTCTGTCTCACTCGATCCATCAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGCCCCTACCAATGCGACGTCTGCTATCTGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCCCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGTCCTTACACGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGGCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACGTGCAAGCAGTATCTGGAGATTCACACGCGCACCCACACCGGCGAGCGTCCCTATCAGTGCGACATCTGCTTGAAGCGGTTCACCCAGAAATCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCCGCAGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAATCGACACTCAATATACACAAAAGAACGCACACAGTGCAAGGTCGGCCGTATCAGTGCATGGAGTGTCCTGCGGCGTTCACTTGCAAACCGTATCTGGAGATACATATGCGCACACACACAGGCGAGCGGCCTTTCGAGTGCGATGTCTGTTACAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATTCACACCGgGGAACGGCCATATGCCTGTGATATTTGTCAGAAGCGGTTCGCAGTGAAAAGCTACGTAACAGCACACAGGTGGTCGCACGTAGCCGACAAGCCTCTGAACTGCGACCGTTGCTCTATGACGTTTACATCCAAGTCTCAGTTCGCGCTGCACATCCGCACGCACACGGCCGGCTCCTGCTACGAGTGCAGTGTCTGCGGACGCACTTTTGTCAGGGACAGCTATCTAATACGACATCACAATCGCGTGCACCGTGAGAACCACAGTAATGTGTCGGCTAATAGCATCGGAACTATCAACAGTGTGGCGACAAACACTAACAACTCTAACAGCAACTACGATTCCCCCGGCGTTTGTGACTTAAGCTTTGTTCCGATGGTAAATCGTTACATGACTTCCCAAGGCACCCAAGTGTCTATGCAAGACACTCAGAGCAAGATGTCGGCTATGTCGCCTCAGTCCATCGCGTCAATATCGTCGCCGCCACCTCCGCACACGCCCACTCCACAGCCCCAAATGTCGGGTCAGATGCATCTCGCAGACTGA
Protein Sequence
MAGGEAGWRQSVEWRSTLGFAISFPAHWGVGVGGVARGVGVPVPPPGDLLATISMFEQQIKAEPMSFYSSHAHVHSGPPTIVRSDSNHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMEQHQQQDMQQDDEGMGVDLGSVQTKMESNGGGSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALIVKERPYKCELCAVRFTQSSSLNRHKKIHTGGLFSSPTFYPPYDTLDSYPKSIATARSLSHSIHQEHRRALLAKERPYQCDVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD