Axyl009402.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips xylosteana
Gene Symbol
-
Assembly
GCA_947563465.1
Location
OX387358.1:10122057-10136926[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00012 0.0089 17.2 0.1 3 23 129 149 128 149 0.97
2 18 1.1e-06 8.1e-05 23.6 1.2 1 23 155 177 155 177 0.99
3 18 6.9e-06 0.0005 21.1 2.7 1 23 183 205 183 205 0.99
4 18 2.6e-05 0.0019 19.3 1.3 1 23 220 242 220 242 0.98
5 18 0.00014 0.01 17.0 0.7 1 23 257 279 257 279 0.98
6 18 6.3e-05 0.0046 18.1 3.1 1 23 294 316 294 316 0.98
7 18 4.4e-07 3.2e-05 24.9 1.5 1 23 331 353 331 353 0.99
8 18 0.00036 0.026 15.7 1.8 1 23 359 381 359 381 0.98
9 18 1.4e-05 0.001 20.2 2.1 1 23 387 409 387 409 0.99
10 18 0.045 3.3 9.1 1.8 1 23 416 438 416 438 0.98
11 18 7.5e-07 5.4e-05 24.2 2.3 1 23 444 466 444 466 0.99
12 18 0.19 14 7.2 1.8 1 23 473 495 473 495 0.98
13 18 3e-06 0.00022 22.2 1.5 1 23 501 523 501 523 0.99
14 18 0.00058 0.042 15.1 0.7 1 23 530 552 530 552 0.99
15 18 3.4e-06 0.00024 22.1 1.9 1 23 558 580 558 580 0.98
16 18 0.0025 0.18 13.1 0.3 1 20 586 605 586 608 0.93
17 18 4.8e-05 0.0035 18.5 1.4 2 23 615 636 614 636 0.96
18 18 4.3e-06 0.00032 21.8 1.4 1 23 642 665 642 665 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCTGAACCTATGAGTTTCTACACATCCCACGCCCACGTCCACCCCGGCCCGCCCACAATAGTCCGCTCCGATTCAAACCATGCCATCATCAACATGAACCAACACCATCCCGAGGACTCGAAGGACAGCCTCATAGTGCAGCAACAAGTGCAACATCAGCAGGATCTGATGGAACAGCACCAGCAACAGGAGATGCAACAAGATGATGAGTTAAGCTTTAAAGGAATGGATGATGAAGGTGTTGAAATGGATATGGATGGACGCCAATGCTCTCAGGGCATGGGCGTTGATATGGGATCAGTTCAAACCAAAATGGAGATATCAAATGGAGGCCAGTCGACACCACGTTCCAAACCGCAAGCCTGTAAGGTTTGCGGTAAAGTATTGTCGTCCGCTTCGTCGTACTACGTCCATATGAAGCTTCACTCCGGAAACAAACCCTTTCAGTGCACGGTTTGCGACgcagctttctgccgcaagccgtacctggaagttcacatgcgaacgcatacgggcgaaagaccctttcaatgcgacctgtgcctcaaacggttcacacagaaatcgagccttaatacgcacaaacgcgtccacaccgatgagcacatgcgcgccttgatggtgaaggagcggccctacaagtgtgagctctgtgccgtcaggttcacgcagagctccagcctcaaccgccacaagaaaatacacacggAGGAAcacagacgcgcgctgctggctaaggaacggccctaccaatgcggcgtctgctatctgagattcacgcagaaatcgagtttgggccggcacgggaaaatccataccgAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggccgacatgGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcagtgcgacatctgtgacaagcggttcacgcagaagtccagcctgggcactcataagcgtatacacactggggagcggccgttccagtgcgccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaaaatacatacgggcgagcggccctatcagtgcgacgcctgtctcaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcactcagTCCagggcagaccgttccagtgcctgtcgtgccccgccgccttcacgtgcaagcagtacctggagatacacacgcgcacgcacaccggcgagcgcccctatcagtgcgacatctgtctcaagcgcttcacgcagaaatccagtctcaacatccacaagcggacgcactcagtgcagggccgccccttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagatccacaaccgcacgcacaccggcgagcgcccctaccagtgcgacgtctgcctcaaacggttcgcgcaaaagtccacactcaacatccacaaacgaacgcacacagtgcaaggtcggccgtatcagtgcatggagtgtccggcggcgttcacttgcaagccgtatctggagatacacatgcgcacgcatacgggcgagagacctttcgagtgcgatgtctgttacaagcgcttcacgcagaaatcgacgctcaacattcacaagcgaatacacaccgGAGAACGGCCATATGCCTGTGATATTTGTCAGAAACGATTCGCCGTTAAGAGCTACGTAACAGCGCACAGGTGGTCGCACGTAGCCGACAAGCCTTTGAACTGCGACCGCTGCTCGATGACATTCACGTCCAAGTCCCAGTTCGCGCTGCACATCCGCACGCACACCGCCGGCTCGTGCTACGAGTGCAGCGTCTGCGGCCGAACTTTCGTACGCGATAGCTACCTAATACGACATCACAACCGCGTGCACCGTGAGAATCACAGCAACGTGTCCGCAAATAGCATCGGCACCATCAACAGTGTCGCGACCAACACTAACAACTCCAACAATAGCAACTACGACTCGCCTGGCGTTTGTGACTTAAGTTTTGTACCCATGGTCAATCGTTACATGACCTCGCAAGGGACACAGGTCTCCATGCAAGACACGCAAAGTAAGATGTCGGCAATGTCCCCGCAGTCTATCGCGTCGATTTCGTCGCCGCCGCCGCCACATACGCCCACTCCGCAGCCTCAGATGTCGAGTCAGATGCATCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHPGPPTIVRSDSNHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMEQHQQQEMQQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMEISNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCAVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCAVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSSQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_00022996;
80% Identity
-