Agoe088261.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argyresthia goedartella
Gene Symbol
-
Assembly
GCA_949825045.1
Location
OX463826.1:16794874-16815040[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00015 0.039 17.2 0.1 3 23 118 138 117 138 0.97
2 18 1.4e-06 0.00035 23.6 1.2 1 23 144 166 144 166 0.99
3 18 8.4e-06 0.0022 21.1 2.7 1 23 172 194 172 194 0.99
4 18 1.7e-05 0.0045 20.1 3.9 1 23 219 241 219 241 0.98
5 18 0.00023 0.059 16.6 0.6 1 23 279 301 279 301 0.98
6 18 0.00014 0.036 17.3 3.1 1 23 316 338 316 338 0.98
7 18 5.2e-07 0.00014 24.9 1.4 1 23 353 375 353 375 0.99
8 18 0.00025 0.066 16.4 2.6 1 23 381 403 381 403 0.98
9 18 2.4e-06 0.00063 22.8 1.4 1 23 409 431 409 431 0.98
10 18 0.23 59 7.2 1.8 1 23 438 460 438 460 0.98
11 18 1.6e-06 0.00042 23.3 2.3 1 23 466 488 466 488 0.99
12 18 0.23 59 7.2 1.8 1 23 495 517 495 517 0.98
13 18 3.7e-06 0.00097 22.2 1.5 1 23 523 545 523 545 0.99
14 18 0.00016 0.043 17.0 0.8 1 23 552 574 552 574 0.99
15 18 7e-06 0.0018 21.3 1.4 1 23 580 602 580 602 0.98
16 18 0.003 0.78 13.1 0.3 1 20 608 627 608 630 0.93
17 18 5.8e-05 0.015 18.5 1.4 2 23 637 658 636 658 0.96
18 18 5.3e-06 0.0014 21.7 1.4 1 23 664 687 664 687 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCCGAGCCTATGAGCTTCTACAGCCACCCGCACATCCACACTGGCCCACCAGCCGTGGTGCGGTCGGAGGCGCACGGCATGCTCATGCATCACGAGGACAGCAAGGACAGCCTCATTGCCCAGCAGCAGCACCAGGACATGATGGAACACCAGCAGGAGATGCAGCACCACGATCAGGATGAGCTCAGCTTCAAAGGAATGGAGGATGAAGGGGTCGATATGGACATGGATGGTAGACATCAGGGTATGGGTGTTGAGATGGGATCTGTACAAACCAAAATGGAAGTCTCAAACGGAGGGTCGTCCACACCAAGATCTAAGCCGCAGGCCTGTAAGGTTTGCGGCAAAGTACTTTCATCGGCTTCGTCGTACTACGTTCACATGAAGTTGCACTCTGGAAACAAACCTTTCCAGTGTACTGTTTGCGACGCGGCGTTCTGTCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGGCCCTTCCAGTGCGACCTGTGCCTCAAGCGGTTCACGCAGAAGTCCAGTCTCAACACGCACAAGCGCGTCCACACCGGTGATAGACGATGGCGGTTGTGGCTTctagatgagcacacgcgagcGTTGTTGGCGAAGGAGCGGCCCTTCCGATGTGGCGTCTGTCACATGCGCTTCACACAGAGCTCCAGCCTCAACCGACACAAGAAAATACATACGGCTCAAAAGTCCGGCACCGCTCATATGTTTAATGGTTACCCGTGTTCTGACTTGTGCGTGGTTTCGTCAGAGGAGCACAAGCGCGCGCTGATGGCTAAGGAACGCCCCTACCAATGTGGCGTCTGTTACGTGAGGTTCACACAGAAATCGAGTTTGGGCCGGCACGGGAAAATTCATACCGAGGAACACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACGTCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGTCACGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATGAACAAAGTGCGCCCCTATCAGTGTGAGATCTGCGACAAACGTTTCACGCAGAAGTCGAGCCTGGGCACGCATAAGCGCATACACACCGGGGAGAGGCCGTTCCAGTGCTCCGTCTGCCTCAAGTCGTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCCGTGCGACGTCTGCCTCAAGCGTTTCACACAGAAGTCCAGCCTCAATATACATAAGCGGACGCACTCAGTCCAGGGCAGACCGTTCCAGTGCCTCTCCTGTCCGGCCGCGTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACGGGCGAGCGGCCCTACCAGTGTGACGTGTGCCTCAAGCGGTTCACTCAGAAGTCCAGTCTCAACATCCACAAGCGGACCCACTCAGTGCAGGGGCGTCCGTTCCAATGTCTGTCCTGTCCGGCCGCATTCACCTGCAAGCAGTACCTGGAGATACACAACCGCACGCACACAGGCGAGAGGCCCTACCAGTGTGACGTGTGTCTGAAAAGATTCGCGCAAAAGTCCACACTCAACATTCATAAACGAACGCACACAGTGCAAGGCCGCCCGTACCAATGCACGGAGTGTCCAGCCGCGTTCACGTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACGGGAGAGCGTCCTTACGAGTGCGCGGTCTGTTTCAAACGATTCTCGCAGAAGTCCACGTTGAATATACACAAGCGCATACATACCGGGGAACGTCCATACGCCTGTGATATTTGCCAGAAACGATTTGCTGTGAAGAGTTATGTAACAGCTCACAGATGGTCGCACGTGGCGGACAAGCCGCTCAACTGCGACCGCTGCTCCATGACTTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACACCGCCGGCTCCTGCTACGAGTGCTCCGTGTGCGGACGTACCTTCGTCAGGGACAGCTACCTCATACGACACCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATAGGCACCATCAACAGCGTCgccaccaacaccaacaactcCAACAGCAACTACGACTCGCCGGGCGTCTGCGACCTGAGCTTCGTGCCGCTGGTGAACCGCTACATGACGTCTCAGGGCACTCAAGTGTCCATGCAAGATACTAACAAGATGTCCGCCATGTCGCCTCAGTCGATAGCCTCTATTTCGTCTCCACCGCCGCCACACACGCCGACACCTCAGCCGCAGATCGCCGGGCAGATGCACATGGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYSHPHIHTGPPAVVRSEAHGMLMHHEDSKDSLIAQQQHQDMMEHQQEMQHHDQDELSFKGMEDEGVDMDMDGRHQGMGVEMGSVQTKMEVSNGGSSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTGDRRWRLWLLDEHTRALLAKERPFRCGVCHMRFTQSSSLNRHKKIHTAQKSGTAHMFNGYPCSDLCVVSSEEHKRALMAKERPYQCGVCYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHVCFMRFTQKSSLGRHGKIHTEEHIQSLMNKVRPYQCEICDKRFTQKSSLGTHKRIHTGERPFQCSVCLKSFTQKCALNLHEKIHTGERPYPCDVCLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHMRTHTGERPYECAVCFKRFSQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNSNYDSPGVCDLSFVPLVNRYMTSQGTQVSMQDTNKMSAMSPQSIASISSPPPPHTPTPQPQIAGQMHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_00161754;
80% Identity
-