Pcor015710.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pandemis corylana
Gene Symbol
-
Assembly
GCA_949127965.1
Location
OX421865.1:7671024-7682315[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00014 0.009 17.1 0.1 3 23 128 148 127 148 0.97
2 19 1.3e-06 8.1e-05 23.5 1.2 1 23 154 176 154 176 0.99
3 19 7.8e-06 0.00051 21.0 2.7 1 23 182 204 182 204 0.99
4 19 2.9e-05 0.0019 19.2 1.3 1 23 219 241 219 241 0.98
5 19 0.00016 0.01 16.9 0.7 1 23 256 278 256 278 0.98
6 19 7.1e-05 0.0046 18.0 3.1 1 23 293 315 293 315 0.98
7 19 5e-07 3.2e-05 24.8 1.5 1 23 330 352 330 352 0.99
8 19 0.00022 0.014 16.4 2.8 1 23 358 380 358 380 0.98
9 19 0.00014 0.0088 17.1 0.0 1 23 428 450 428 450 0.99
10 19 1.6e-05 0.001 20.0 2.1 1 23 456 478 456 478 0.99
11 19 0.05 3.3 9.0 1.8 1 23 485 507 485 507 0.98
12 19 8.4e-07 5.5e-05 24.0 2.3 1 23 513 535 513 535 0.99
13 19 0.058 3.8 8.8 1.8 1 23 542 564 542 564 0.98
14 19 3.4e-06 0.00022 22.1 1.5 1 23 570 592 570 592 0.99
15 19 0.00065 0.042 14.9 0.7 1 23 599 621 599 621 0.99
16 19 3.8e-06 0.00025 22.0 1.9 1 23 627 649 627 649 0.98
17 19 0.0028 0.18 13.0 0.3 1 20 655 674 655 677 0.93
18 19 5.4e-05 0.0035 18.4 1.4 2 23 684 705 683 705 0.96
19 19 4.9e-06 0.00032 21.6 1.4 1 23 711 734 711 734 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCTGAACCTATGAGTTTCTACACATCCCACGCCCACGTCCACCCCGGCCCGCCCACAATAGTCCGCTCAGACTCCAACCATGCCATCATCAACATGAATCATCATCCCGAGGACTCAAAGGACAGCCTTATAGTGCAACAGCAGGTGCAACATCAGCAGGATCTGATGGAACAGCACCAGCAACAGGAGATGCAGCAAGATGATGAGTTAAGCTTTAAAGGAATGGACGATGAAGGTGTCGAAATGGATATGGATGGCCGCCAATGCTCTCAGggaaTGGGTGTTGATATGGGATCAGTTCAAACTAAAATGGAGGTATCAAATGGTGGCCAATCAACACCACGTTCCAAACCGCAAGCCTGTAAGGTTTGCGGTAAGGTATTGTCGTCCGCTTCGTCATACTACGTTCATATGAAACTTCACTCTGGAAACAAACCCTTCCAGTGCACGGTTTGCGACGCAGCTTTCTGCCGCAAGCCTTACCTGGAAGTCCACATGCGAACGCATACGGGAGAAAGACCCTTTCAGTGCGACCTGTGTCTCAAACGGTTCACACAGAAATCGAGCCTTAATACGCACAAACGCGTTCACACCGATGAGCACATGCGCGCCTTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTGCCGTCAGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGGCCCTACCAATGCGGCGTCTGCTATCTGAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGGAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACTCATAAGCGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGAGGCGTCTGGGCGGCGGAGCGCGACGCGTGGGATCGGCATGATGGCATTCGGCAGCGGACCGGTCCGCGCGCGGCTGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGCCCTTACTCGTGCGGGCTCTGCCCCGCGGCCTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACGTGCAAGCAGTACCTGGAGATacacacgcgcacgcacaccGGCGAGCGGCCCTATCAGTGCGACATCTGTCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAACGCTTCGCGCAAAAGTCCACACTCAACATCCacaaacgaacgcacacagTGCAAGGTCGGCCGTATCAGTGCATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTATCTGGAGATACACATGCGCACGCATACGGGCGAGAGGCCTTTCGAGTGCGATGTCTGTTACAAGCGCTTCACGCAGAAATCGACGCTGAACATTCACAAGCGAATTCACACCGGAGAACGGCCATATGCCTGTGATATTTGTCAGAAACGATTCGCTGTTAAGAGCTATGTAACAGCACACAGATGGTCGCACGTAGCCGACAAGCCTTTGAACTGCGACCGCTGCTCGATGACTTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACACCGCCGGCTCGTGCTACGAGTGCAGCGTCTGTGGCCGCACCTTCGTCCGCGACAGCTATCTAATACGACATCACAACCGCGTGCACCGTGAGAACCACAGCAACGTGTCTGCGAACAGTATCGGCACCATCAACAGCGTCGCGACTAACACCAACAACTCCAACAATAGCAACTACGACTCGCCCGGCGTTTGTGACTTAAGTTTTGTACCCATGGTCAACCGTTACATGACCTCACAAGGGACACAGGTCTCCATGCAAGACACGCAGAGTAAGATGTCGGCGATGTCCCCACAATCTATTGCGTCGATATCGTCTCCGCCGCCGCCGCATACGCCCACTCCGCAGCCACAGATGTCGGGGCAGATGCATCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHPGPPTIVRSDSNHAIINMNHHPEDSKDSLIVQQQVQHQQDLMEQHQQQEMQQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCAVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTEASGRRSATRGIGMMAFGSGPVRARLRRRRALLAFVCALGAVQGRPYSCGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_00022996;
80% Identity
-