Aals014059.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agonopterix alstromeriana
Gene Symbol
-
Assembly
GCA_963924505.1
Location
OZ004676.1:7977858-7996311[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0001 0.0067 17.3 0.1 3 23 129 149 128 149 0.97
2 17 9.5e-07 6.1e-05 23.7 1.2 1 23 155 177 155 177 0.99
3 17 5.9e-06 0.00038 21.2 2.7 1 23 183 205 183 205 0.99
4 17 5.4e-06 0.00035 21.3 2.5 1 23 220 242 220 242 0.98
5 17 5.4e-05 0.0035 18.2 3.1 1 23 257 279 257 279 0.98
6 17 3.8e-07 2.4e-05 25.0 1.5 1 23 294 316 294 316 0.99
7 17 6.1e-05 0.004 18.0 0.1 1 23 323 345 323 345 0.99
8 17 1.2e-05 0.00076 20.3 2.1 1 23 351 373 351 373 0.99
9 17 0.038 2.5 9.2 1.8 1 23 380 402 380 402 0.98
10 17 6.4e-07 4.1e-05 24.3 2.3 1 23 408 430 408 430 0.99
11 17 0.16 10 7.3 1.8 1 23 437 459 437 459 0.98
12 17 2.6e-06 0.00017 22.3 1.5 1 23 465 487 465 487 0.99
13 17 0.017 1.1 10.3 0.8 1 23 494 516 494 516 0.99
14 17 2.9e-06 0.00018 22.2 1.9 1 23 522 544 522 544 0.98
15 17 0.0021 0.14 13.2 0.3 1 20 550 569 550 572 0.93
16 17 4.1e-05 0.0026 18.6 1.4 2 23 579 600 578 600 0.96
17 17 3.7e-06 0.00024 21.8 1.4 1 23 606 629 606 629 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAACAGATCAAGGCAGAACCTATGAGCTTCTACACATCACACCCCCATATCCACTCCGGCCCCCCAACAATAGTGCGCTCAGACTCGAACCATGCCATCATCAACATGCAGCACCACCACGAGGACTCCAAGGACAGCCTCATCGTTCAGCAGCAGGTCCACCAGCAGGAGATGCTCGACCACCAACAGCAGGAAATGCAACAGCAACAGGATGATGAGTTAAGCTTCAAAGGAATGGAAGATGAAGGTGTCGAAATGGATATGGACGGCCGCCAATGTTCTCAGGGTATGGGTGTGGATATGGGATCAGTTCAAACTAAAATGGAGGTGACAAATGGGGGTGGGCAATCTGCACCACGATCGAAGCCACAGGCCTGTAAGGTCTGTGGCAAAGTACTCTCGTCCGCTTCATCATACTACGTCCATATGAAGCTTCACTCTGGAAATAAGCCCTTCCAGTGCACGGTTTGCGACGCGGCGTTCTGTCGCAAGCCGTACCTGGAAGTGCACATGCGTACACACACGGGCGAGCGCCCCTTCCAGTGCGACTTGTGCCTAAAACGATTCACACAGAAGTCCAGCCTCAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGTTGATGGTGAAGGAGCGGCCCTACAGGTGTGACCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTTGGCCGACACGGAAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTACGCCCCTATCAATGCGACATCTGTGACAAGCGCTTCACTCAGAAGTCCAGCCTGGGCACTCATAAGCGTATACACACCGTGCAAGGGCGTCCTTTCACGTGCGGGCAATGCCCGGCCGCGTTCGCCCGCCGGCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAATGCGACGCCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACCCACACCGGCGAGCGACCCTATCAGTGCGACATCTGCCTCAAACGCTTCACTCAGAAATCCAGTCTGAACATCCACAAACGGACGCACTCAGTCCAGGGGCGTCCGTTCCAGTGCCTATCGTGTCCCGCCGCGTTCACGTGCAAGCAGTATCTGGAGATACACAACCGTACCCACACCGGCGAGAGGCCCTACCAGTGCGACGTGTGCCTCAAGCGGTTCGCCCAGAAGTCCACGCTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTATCAGTGTATGGAGTGCCCGGCCGCGTTCACGTGCAAGCCCTACCTCGAGATCCACAACCGCACTCACACCGGCGAGCGACCCTTCGAGTGTGATGTCTGTTACAAACGATTCACCCAGAAGTCGACTCTGAACATACACAAGCGAATCCATACCGGAGAGCGTCCGTACGCTTGTGATATATGTCAGAAACGATTTGCTGTGAAGAGCTACGTAACAGCTCACAGATGGTCGCACGTGGCGGACAAGCCTCTGAACTGCGACCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACCCACTCCGCCGGCTCCTGCTACGAGTGCAGTGTGTGCGGGCGTACCTTCGTGCGCGACAGCTATCTTATAAGACATCACAATCGCGTGCACCGCGAGAATCACAGCAACGTGTCGGCCAACAGTATCGGCACTATCAACAGCGTCGCGACCAACACGAACAACTCCAACAACTTTGACTCCTCCGCCGTCTGCGACTTGAGTTTCGTGCCGATGGTGAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCGATGCAGGACACGCAGAGCAAAATGTCCGCCATGTCGCCCCAGTCCATCGCTTCTATTTCGTCGCCGCCTCCCCCTCACACGCCTACGCCCCAGATGTCGAGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHIHSGPPTIVRSDSNHAIINMQHHHEDSKDSLIVQQQVHQQEMLDHQQQEMQQQQDDELSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVTNGGGQSAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYRCDLCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPFTCGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHNRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNFDSSAVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQMSSQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
-
80% Identity
-