Aalb015333.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argyresthia albistria
Gene Symbol
-
Assembly
GCA_963457715.1
Location
OY735268.1:6296054-6311626[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00013 0.0073 17.2 0.1 3 23 118 138 117 138 0.97
2 18 1.1e-06 6.6e-05 23.7 1.2 1 23 144 166 144 166 0.99
3 18 7.1e-06 0.00041 21.2 2.7 1 23 172 194 172 194 0.99
4 18 3.4e-06 0.0002 22.2 3.8 1 23 209 231 209 231 0.98
5 18 0.00011 0.0061 17.5 0.7 1 23 246 268 246 268 0.98
6 18 0.00012 0.0068 17.3 3.1 1 23 283 305 283 305 0.98
7 18 4.4e-07 2.5e-05 25.0 1.4 1 23 320 342 320 342 0.99
8 18 0.00022 0.012 16.5 2.6 1 23 348 370 348 370 0.98
9 18 2e-06 0.00012 22.9 1.4 1 23 376 398 376 398 0.98
10 18 0.19 11 7.2 1.8 1 23 405 427 405 427 0.98
11 18 1.4e-06 8e-05 23.4 2.3 1 23 433 455 433 455 0.99
12 18 0.19 11 7.2 1.8 1 23 462 484 462 484 0.98
13 18 3.1e-06 0.00018 22.3 1.5 1 23 490 512 490 512 0.99
14 18 0.00014 0.008 17.1 0.8 1 23 519 541 519 541 0.99
15 18 5.3e-06 0.00031 21.6 1.3 1 23 547 569 547 569 0.98
16 18 0.0025 0.15 13.1 0.3 1 20 575 594 575 597 0.93
17 18 4.9e-05 0.0028 18.5 1.4 2 23 604 625 603 625 0.96
18 18 4.5e-06 0.00026 21.8 1.4 1 23 631 654 631 654 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCTGAGCCTATGAGCTTCTACAGCCACCCGCACATCCACACTGGCCCGCCCGCCGTGGTGCGGTCGGAGGCTCACGGCATGCTCATGCACCACGAGGACAGCAAGGACAGCCTGATAGCGCAGCAGCAGCATCAGGACATGCTGGAGCACCAGCAGGAGATGCAGCACCATGACCAGGATGAGCTCAGCTTCAAGGGAATGGAGGATGAAGGGGTTGAAATGGACATGGATGGTAGACATCAGGGTATGGGTGTTGAGATGGGATCTGTACAGACCAAAATGGAAGTCCCAAATGGAGGGTCGTCCACACCAAGATCAAAACCACAGGCCTGTAAGGTTTGCGGCAAAGTACTTTCATCGGCTTCGTCATACTACGTTCACATGAAGTTGCATTCTGGAAATAAACCCTTCCAGTGTACTGTTTGCGACGCAGCCTTCTGTCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGGCCCTTCCAGTGCGACCTGTGTCTGAAACGATTCACGCAGAAGTCGAGCCTCAACACGCACAAGCGCGTACACACCGATGAGCACACGAGAGCCTTGTTGGCGAAGGAGCGGCCCTTCCGCTGTGGCATCTGCCACATGCGCTTCACACAGAGCTCCAGCCTCAACCGACACAAGAGAATACATACGGAGGAGCACAGGCGCGCGCTGATGGCTAAGGAACGCCCCTACCAATGCGACGTCTGTTACGTGAGGTTCACACAGAAATCGAGTTTGGGCCGGCACGGGAAAATTCATACCGAGGAACACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACGTCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGTCACGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATGAACAAAGTGCGCCCCTATCAGTGTGAGATCTGCGACAAACGTTTCACGCAGAAGTCCAGCCTGGGCACGCATAAGCGCATACACACCGGGGAGAGGCCGTTCCAGTGCTCCGTCTGCCTCAAGTCGTTCACGCAGAAGTGCGCCCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCCCTGCGACGTCTGCCTCAAGCGTTTCACACAGAAGTCCAGCCTCAATATACATAAGCGGACGCACTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCGTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACGGGCGAGCGCCCCTACCAGTGTGACGTGTGCCTCAAGCGGTTCACCCAGAAGTCCAGTCTCAACATCCACAAGCGGACCCACTCAGTGCAGGGGCGTCCCTTCCAGTGCCTGTCGTGTCCGGCCGCGTTCACGTGCAAGCAGTACCTAGAGATTCACAATCGCACGCACACGGGCGAGAGGCCCTACCAGTGTGACGTGTGCCTGAAAAGATTCGCGCAAAAGTCCACACTCAACATTCATAAACGAACGCACACAGTGCAAGGCCGCCCGTACCAGTGCACGGAGTGTCCAGCCGCGTTCACGTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACAGGCGAGCGACCTTACGAGTGCGCGGTCTGTTACAAACGATTCTCGCAGAAGTCCACGCTGAATATACACAAGCGCATACATACTGGGGAACGTCCATACGCCTGTGATATTTGCCAGAAAAGATTTGCTGTGAAGAGTTATGTAACAGCTCACAGGTGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTTCACATCCGCACGCACACCGCCGGCTCCTGCTACGAGTGCTCCGTGTGCGGGCGCACCTTCGTCAGGGACAGCTACCTCATACGGCACCACAACCGCGTGCACCGTGAGAACCACAGCAACGTGTCGGCGAACAGCATAGGCACCATCAACAGCGTCGCCACCAACACCAACAACTCCAACAGCAACTACGACTCGCCCGGCGTGTGCGACCTGAGCTTCGTGCCGCTAGTGAACCGCTACATGACGTCGCAAGGCACTCAAGTGTCCATGCAAGATACTAGCAAGATGTCCGCCATGTCTCCCCAGTCGATCGCCTCAATATcgtcgccgccgccgccgcacacgCCCACGCCGCAGCAGCAGATCTCGGGACAGCTGCACATGGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYSHPHIHTGPPAVVRSEAHGMLMHHEDSKDSLIAQQQHQDMLEHQQEMQHHDQDELSFKGMEDEGVEMDMDGRHQGMGVEMGSVQTKMEVPNGGSSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHTRALLAKERPFRCGICHMRFTQSSSLNRHKRIHTEEHRRALMAKERPYQCDVCYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHVCFMRFTQKSSLGRHGKIHTEEHIQSLMNKVRPYQCEICDKRFTQKSSLGTHKRIHTGERPFQCSVCLKSFTQKCALNLHEKIHTGERPYPCDVCLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHMRTHTGERPYECAVCYKRFSQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNSNYDSPGVCDLSFVPLVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQQQISGQLHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_00163494;
80% Identity
-