Talt022086.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tortricodes alternella
Gene Symbol
-
Assembly
GCA_947859335.1
Location
OX401969.1:26109166-26124110[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.9e-05 0.0063 17.2 0.1 3 23 127 147 126 147 0.97
2 18 9e-07 5.8e-05 23.6 1.2 1 23 153 175 153 175 0.99
3 18 5.6e-06 0.00036 21.1 2.7 1 23 181 203 181 203 0.99
4 18 2.9e-05 0.0018 18.9 1.2 1 23 218 240 218 240 0.98
5 18 0.00011 0.0072 17.0 0.7 1 23 255 277 255 277 0.98
6 18 5.1e-05 0.0033 18.1 3.1 1 23 292 314 292 314 0.98
7 18 6.4e-07 4.1e-05 24.1 1.5 1 23 329 351 329 351 0.99
8 18 0.00016 0.01 16.6 2.8 1 23 357 379 357 379 0.98
9 18 1.1e-05 0.00071 20.2 2.1 1 23 385 407 385 407 0.99
10 18 0.15 9.6 7.2 1.8 1 23 414 436 414 436 0.98
11 18 6e-07 3.9e-05 24.2 2.3 1 23 442 464 442 464 0.99
12 18 0.042 2.7 8.9 1.8 1 23 471 493 471 493 0.98
13 18 2.5e-06 0.00016 22.3 1.5 1 23 499 521 499 521 0.99
14 18 0.00047 0.03 15.1 0.7 1 23 528 550 528 550 0.99
15 18 2.7e-06 0.00017 22.1 1.9 1 23 556 578 556 578 0.98
16 18 0.002 0.13 13.1 0.3 1 20 584 603 584 606 0.93
17 18 0.0001 0.0066 17.1 0.9 2 23 613 634 612 634 0.96
18 18 3.5e-06 0.00022 21.8 1.4 1 23 640 663 640 663 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCTGAACCTATGAGCTTCTACACATCCCACGCACACATCCACCCTGGCCCGCCCACAATAGTCCGCTCCGATTCCAACCATGCCATCATCAACATGCAGCATCACCCTGAGGACTCCAAGGACAGCCTTTTAGTACAACAACAGGTGCAGCATCAGCAGGATCTGATGGACCAGCACCAGCAACAAGAAATGCAGCAGGATGATGAGTTAAGCTTTAAAGGAATGGATGATGAAGGTGTCGAAATGGATATGGATGGCCGCCAATGCTCTCAGGGCATGGGCGTCGATATGGGAGTTACTACCAAAATGGAAATAGCCAACGGAGGTCAATCAACACCGCGTTCAAAGCCACAAGCCTGTAAGGTTTGCGGCAAAGTATTGTCGTCCGCTTCATCATATTACGTCCATATGAAGCTTCACTCGGGAAACAAACCATTTCAGTGCACGGTTTGCGACGCAGCTTtttgccgcaagccgtacttagaggttcacatgcgaacacacactggcgaaaggccttttcagtgcgacctctgcctcaaaagattcacacagaaatccagcctcaatacgcacaaacgcgtccacaccgatgagcacacgcgcgcgttgatggcgaaggagcggccctacaggtgcgagctctgtgccgtccggttcacgcagagctccagcctcaaccgccacaagaaaatacatacggAGGAACACAGACGCGCCCTGCTGGCCAAGgaacggccctaccaatgcggcgtctgctatctgagattcacgcagaaatcgagtttgggccggcacGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggccgacatgGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcagtgcgacgtctgtgacaagcggttcacgcagaagtccagcctgggcacccataaacgtatacacactggggagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaaaatacatacgggcgagcggccctatcagtgcgacgcgtgtctcaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcacacagTCCAGGGCAgaccgttccagtgcctgtcgtgccccgcggccttcacctgcaagcaatacctggagatccacaaccgcacgcacaccggcgagcgcccctatcagtgcgacatctgtctcaagcgcttcacgcagaaatccagtctcaacatccacaagcggacgcactcagtgcagggccggcccttccagtgcctgcagtgccccgcggccttcacctgcaagcagtacctggagatccacaaccgcacgcacaccggcgagcgcccctaccagtgcgacgtctgcctcaagagattcgcgcaaaagtctactctcaacatacacaaacgaacgcacacagtgcaaggtcggccgtatcagtgcatggagtgcccggcggcgttcacttgcaagccgtatctggagatacacatgcgcacgcatacgggcgagaggcccttcgagtgcgatgtctgttacaagcgcttcacgcagaaatcgacgctcaacattcacaagcgaattcacaccgGAGAACGGCCATATGCCTGTGATATATGTCAGAAACGATTTGCCGTGAAGAGCTACGTAACAGCACATAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCGAAGGCGCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGGCTCCTGCTACGAGTGCAGCGTCTGCGGCCGCACCTTCGTCCGGGACAGCTATCTAATACGACATCACAATCGCGTGCATCGTGAGAACCATAGCAACGTCTCAGCAAACAGCATCGGCACCATAAACAGCGTGGCGACCAATACTAATAATTCTAACAACAGTAATTTTGACTCTCCCGGCGTTTGTGACTTAAGTTTTGTGCCCATGGTGAATCGTTACATGACTTCTCAAGGAACACAGGTGTCTATGCAAGATACCAGTAAGATGTCGGCTATGTCGCCGCAGTCAATCACGTCGATATCGTCGCCGCCGCCGCCGCACACGCCCACGCCGCAGCCCCAGATGTCGGCGCAGATGCATCTCACCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHIHPGPPTIVRSDSNHAIINMQHHPEDSKDSLLVQQQVQHQQDLMDQHQQQEMQQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDMGVTTKMEIANGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHTRALMAKERPYRCELCAVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDVCDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKAQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSITSISSPPPPHTPTPQPQMSAQMHLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_01425309;
80% Identity
-