Lstr027568.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lathronympha strigana
Gene Symbol
-
Assembly
GCA_949128165.1
Location
OX421916.1:11513579-11529709[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00015 0.013 17.1 0.1 3 23 128 148 127 148 0.97
2 19 1.4e-06 0.00012 23.6 1.2 1 23 154 176 154 176 0.99
3 19 8.6e-06 0.00076 21.1 2.7 1 23 182 204 182 204 0.99
4 19 9.4e-07 8.2e-05 24.1 1.4 1 23 219 241 219 241 0.98
5 19 0.00017 0.015 17.0 0.7 1 23 256 278 256 278 0.98
6 19 3.2e-05 0.0028 19.3 3.9 1 23 293 315 293 315 0.98
7 19 5.5e-07 4.8e-05 24.8 1.5 1 23 330 352 330 352 0.99
8 19 0.00024 0.021 16.5 2.8 1 23 358 380 358 380 0.98
9 19 0.00037 0.032 15.9 0.0 1 23 387 409 387 409 0.99
10 19 1.7e-05 0.0015 20.1 2.1 1 23 415 437 415 437 0.99
11 19 0.056 4.9 9.1 1.8 1 23 444 466 444 466 0.98
12 19 9.3e-07 8.2e-05 24.1 2.3 1 23 472 494 472 494 0.99
13 19 0.064 5.7 8.9 1.8 1 23 501 523 501 523 0.98
14 19 3.8e-06 0.00033 22.2 1.5 1 23 529 551 529 551 0.99
15 19 0.00072 0.063 15.0 0.7 1 23 558 580 558 580 0.99
16 19 4.2e-06 0.00037 22.1 1.9 1 23 586 608 586 608 0.98
17 19 0.0031 0.27 13.0 0.3 1 20 614 633 614 636 0.93
18 19 5.9e-05 0.0052 18.4 1.4 2 23 643 664 642 664 0.96
19 19 5.4e-06 0.00048 21.7 1.4 1 23 670 693 670 693 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAGCCCATGAGCTTTTACACATCCCACGCCCACGTCCACTCTGGCCCGCCCACCATCGTACGCTCCGACTCCCATGCCATCATCAACATGAACCAGCACCACCCCGAAGACTCGAAGGACAGCCTCATAGTGCAGCAGCAGGTGCAGCATCAACAGGATCTGATGGATCAGCAGCACCAGCAAGATTTGCAGCAAGATGACGAGTTAAGCTTTAAAGGAATGGATGATGAAGGAGTCGAAATGGATATGGATGGTCGCCAATGCTCTCAGGGCTTGGGCGTCGATATGGGTTCAGTTCAAACAAAAATGGAGGTATCAAATGGAGGACAAACAACACCACGATCAAAACCACAAGCCTGTAAGGTTTGCGGTAAGGTACTCTCGTCCGCTTCATCATATTATGTTCATATGAAGCTTCATTCCGGAAACAAGCCTTTTCAGTGTACGGTTTGCGACGCGGCTTTCTGCCGCAAACCGTACTTGGAAGTCCACATGCGTACGCACACCGGCGAGAGGCCGTTCCAGTGCGATTTGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAGCGCGTCCACACCGATGAGCACATGCGCGCCTTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTGGCGTCAGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCTAGCCAAGGAACGGCCCTACCAATGCGGCGTCTGCTATCTCAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGAGCCGACATGGGAAAATACATACTGAGGAGCACATACAATCGCTGATCAACAAGGTGCGCCCGTACCAATGCGACATTTGCGACAAGCGGTTCACGCAGAAGTCGAGCCTGGGCACTCATAAGCGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGCCCTTACACGTGCGGGCTTTGCCCGGCGGCCTTCGCCCGCCGCCCCTACCTGGACATTCACTTGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACGTGCAAGCAGTACCTGGAGATTCACACGCGCACGCACACCGGCGAGCGGCCTTATCAGTGCGACATCTGCCTCAAGCGCTTCACACAGAAGTCCAGCCTCAACATCCACAAGCGGACCCACTCAGTGCAGGGTCGGCCCTTCCAGTGCCTACAATGCCCGGCCGCCTTCACTTGCAAGCAGTACCTGGAGATCCATAACCGCACGCACACCGGGGAACGGCCTTATCAGTGCGATGTGTGTCTCAAGAGATTCGCGCAAAAGTCCACACTCAATATACATAAACGAACGCATACAGTGCAAGGTCGGCCGTATCAGTGCATGGAGTGCCCGGCCGCGTTCACTTGCAAGCCCTACTTGGAGATACACATGCGGACCCACACTGGCGAACGGCCGTTTGAGTGCGATGTCTGTTACAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATCCATACTGggGAACGGCCTTACGCCTGTGACATTTGTCAGAAACGATTCGCCGTCAAGAGCTACGTAACAGCACACAGATGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGATCGCTGCTCGATGACGTTCACGTCCAAGTCTCAGTTCGCGCTACACATCCGCACGCACTCTGCCGGCTCCTGCTACGAGTGCAGCGTATGCGGCCGCACCTTCGTCCGGGACAGCTATCTAATACGACATCACAATCGCGTGCACCGCGATAACCACAGCAACGTGTCGGCCAACAGCATCGGAACCATCAACAACGTCGCGACCAACACTAACAACTCGAACAACAGCAACTTTGTTGATTCGCCCGGCGTTTGTGACTTAAGcttTGTTCCTATGGTGAATCGTTATATGACATCGCAAGGAACGCAGGTCTCCATGCAAGACACGAGCAAGATGTCTGCAATGTCGCCACAATCTATTGCGTCGATATCTTCGCCGCCTCCGCCGCACACCCCCACTCCGCAGCCCCAGATGTCGGGCCAGATGCACCTGACCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHSGPPTIVRSDSHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMDQQHQQDLQQDDELSFKGMDDEGVEMDMDGRQCSQGLGVDMGSVQTKMEVSNGGQTTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCGVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLSRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGLCPAAFARRPYLDIHLRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNVSANSIGTINNVATNTNNSNNSNFVDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_00022996;
80% Identity
-