Haes020144.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemithea aestivaria
Gene Symbol
-
Assembly
GCA_947507615.1
Location
OX382338.1:7773752-7792682[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0001 0.008 17.2 0.1 3 23 134 154 133 154 0.97
2 18 9.3e-07 7.3e-05 23.6 1.2 1 23 160 182 160 182 0.99
3 18 5.8e-06 0.00045 21.1 2.7 1 23 188 210 188 210 0.99
4 18 3.8e-06 0.0003 21.7 2.6 1 23 225 247 225 247 0.98
5 18 6.9e-05 0.0054 17.7 0.5 1 23 262 284 262 284 0.98
6 18 5.3e-05 0.0041 18.1 3.1 1 23 299 321 299 321 0.98
7 18 3.7e-07 2.9e-05 24.9 1.5 1 23 336 358 336 358 0.99
8 18 0.00016 0.013 16.6 2.8 1 23 364 386 364 386 0.98
9 18 1.2e-05 0.0009 20.2 2.1 1 23 392 414 392 414 0.99
10 18 0.038 2.9 9.1 1.8 1 23 421 443 421 443 0.98
11 18 6.3e-07 4.9e-05 24.2 2.3 1 23 449 471 449 471 0.99
12 18 0.27 21 6.5 1.1 1 23 478 500 478 500 0.98
13 18 2.6e-06 0.0002 22.2 1.5 1 23 506 528 506 528 0.99
14 18 0.00031 0.024 15.7 0.4 1 23 535 557 535 557 0.99
15 18 2.8e-06 0.00022 22.1 1.9 1 23 563 585 563 585 0.98
16 18 0.0021 0.16 13.1 0.3 1 20 591 610 591 613 0.93
17 18 4e-05 0.0031 18.5 1.4 2 23 620 641 619 641 0.96
18 18 3.7e-06 0.00028 21.8 1.4 1 23 647 670 647 670 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAAGCAGAACCGATGAGTTTCTACTCATCGCATCCCCACGTGCACCCCGGACCCCCGACAATAGTGCGGTCGGAGTCGAGTCATCCGATCATCAACATGAATCCGCACCACCTATCGCACGCACACCAGGAGGACTCTAAGGACAGTCTGATAGTACAACATCAAGTACAACACCAACAGGATCTCATGGAACAACACCAGCAGCAGGAGATGCAACAAGATGATGAGCTGAGCTTCAAAGGCATGGAAGACGAGGGAGTAGAAATGGACATGGATGGAAGACAATGTTCACAGGGTATGGGGGTGGACATGGGATCAGTTCAAACTAAAATGGAGGTAGCAAATGGTGGACCAAACACTCCACGGTCAAAACCACAGGCCTGTAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCGGGAAACAAGCCTTTCCAATGCACAGTGTGCGACgcagcgttttgtcgcaagccgtacttagaagtgcacatgcgtacgcacacaggcgaacgaccgttccaatgcgacctttgcctcaagcggttcacgcagaagtccagtcttaacacgcacaaacgcgtacacacagATGAGCACATGCAGTCGTTGCTGGTGAAGgaccgcccctacaagtgtgagctctgtcagatgcggttcacgcagagttccagcctcaaccgacacaagaaaatacacaccgAGGAccacagacgcgcgctgctggctaaggatcgtccctaccagtgcggcgtctgctatgtgcgattcacccagaaatcgagtttgggccggcacgggagaatacacaccgAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggacgtcatgggaaaattcacactgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcagtgcgacatctgtgacaagcggttcacgcagaagtccagccttggcactcataagcgtatacacaccggggagcgtccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaagatacatacgggcgagcggccgtatcagtgcgacgcgtgtctgaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcacacagTCCagggcagaccgttccagtgcctgtcgtgtcccgccgccttcacctgcaagcaatacctggagatacacacgcgcacgcacaccggcgagcgaccgtatcagtgcgacatctgcctgaagcgcttcacgcagaaatcgagtctcaacatccacaagcggacgcactcagtgcagggccggcccttccagtgcctggcgtgccccgccgccttcacttgcaagcagtacctcgagatccacaaccgcacgcacacgggcgagcgcccctaccagtgcgacgtgtgcctcaagcggttcgcacagaagtccacgctcaacatccacaagcgcacgcacacagtgcaagggcggccgtatcagtgcgcggagtgtccggccgcgttcacgtgcaagccctacttggagatccacatgcgcacgcacaccggggagcgccccttcgagtgcgatgtctgttacaaacggttcacgcagaaatccacgctcaacatccacaagcgaatacacaccgGTGAACGCCCTTACGCCTGCGATATCTGTCAGAAACGCTTCGCCGTGAAAAGTTACGTTACAGCTCACAGATGGTCACACGTGGCGGACAAACCGCTGAACTGCGACCGGTGCTCGATGACATTCACGTCCAAATCTCAGTTCGCGCTGCACATCCGCACGCACTCCACCGGCCCCTGCTACGAGTGCAGCGTCTGCGGACGGACCTTCGTGCGGGACAGCTACCTTATACGGCACCACAACCGCGTGCACCGCGACAACCATAGCAACGTGTCCGCCAACAGCATCTCCAACATTAACAGCGTGCCCACCAACAACAATTCCAACAACAACTCCAACTACGACTCCACTGGGGTTTGCGACTTGAGTTTCGTCCCTATGGTGAACCGCTACATGACGTCACAAGGGACGCAGGTCTCGATGCAGGACTCCAAGATGTCTGCCATGTCGCCGCAGTCCATCGCATCCATCTCATCGCCCCCTCCCCCGCACACGCCAACGCCGCAGCCCCAACAGATGTCCAGTCAGATGCACCTCGCTGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHPHVHPGPPTIVRSESSHPIINMNPHHLSHAHQEDSKDSLIVQHQVQHQQDLMEQHQQQEMQQDDELSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVANGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMQSLLVKDRPYKCELCQMRFTQSSSLNRHKKIHTEDHRRALLAKDRPYQCGVCYVRFTQKSSLGRHGRIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLACPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCAECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSTGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNVSANSISNINSVPTNNNSNNNSNYDSTGVCDLSFVPMVNRYMTSQGTQVSMQDSKMSAMSPQSIASISSPPPPHTPTPQPQQMSSQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_01076785;
80% Identity
-