Cros021850.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Choristoneura rosaceana
Gene Symbol
-
Assembly
GCA_037349165.1
Location
JAZBNJ010000032.1:8493743-8506036[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00013 0.011 17.1 0.1 3 23 129 149 128 149 0.97
2 19 1.2e-06 9.5e-05 23.6 1.2 1 23 155 177 155 177 0.99
3 19 7.4e-06 0.00059 21.1 2.7 1 23 183 205 183 205 0.99
4 19 2.7e-05 0.0022 19.3 1.3 1 23 220 242 220 242 0.98
5 19 0.00015 0.012 17.0 0.7 1 23 257 279 257 279 0.98
6 19 6.8e-05 0.0054 18.0 3.1 1 23 294 316 294 316 0.98
7 19 4.7e-07 3.8e-05 24.8 1.5 1 23 331 353 331 353 0.99
8 19 0.00039 0.031 15.7 1.8 1 23 359 381 359 381 0.98
9 19 8e-05 0.0064 17.8 0.0 1 23 388 410 388 410 0.99
10 19 1.5e-05 0.0012 20.1 2.1 1 23 416 438 416 438 0.99
11 19 0.048 3.8 9.1 1.8 1 23 445 467 445 467 0.98
12 19 8e-07 6.4e-05 24.1 2.3 1 23 473 495 473 495 0.99
13 19 0.2 16 7.1 1.8 1 23 502 524 502 524 0.98
14 19 3.3e-06 0.00026 22.2 1.5 1 23 530 552 530 552 0.99
15 19 0.00062 0.05 15.0 0.7 1 23 559 581 559 581 0.99
16 19 3.6e-06 0.00029 22.1 1.9 1 23 587 609 587 609 0.98
17 19 0.0026 0.21 13.0 0.3 1 20 615 634 615 637 0.93
18 19 5.1e-05 0.0041 18.4 1.4 2 23 644 665 643 665 0.96
19 19 4.7e-06 0.00037 21.7 1.4 1 23 671 694 671 694 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCTGAACCTATGAGTTTCTACACATCCCACGCCCACGTCCACCCCGGCCCGCCCACAATAGTCCGTTCCGATTCAAACCATGCCATCATCAACATGAACCAACACCACCCCGAAGATTCAAAGGACAGCCTCATAGTGCAGCAACAAGTGCAACATCAGCAGGATCTGATGGAACAGCACCAGCAACAAGAGATGCAGCAAGATGACGAGttaagCTTTAAAGGAATGGATGATGAAGGTGTTGAAATGGATATGGATGGACGACAATGCTCTCAGGGTATGGGTGTTGATATGGGATCAGTGCAAACCAAAATGGAGATATCAAATGGAGGCCAGTCGACACCGCGTTCCAAACCGCAAGCCTGTAAGGTTTGCGGTAAAGTATTGTCGTCCGCTTCGTCGTACTACGTCCATATGAAGCTTCATTCCGGAAACAAACCCTTCCAGTGCACGGTTTGCGACGCAGCTTTTTGCCGCAAGCCGTACCTGGAAGTTCACATGCGAACGCATACGGGCGAAAGACCCTTTCAGTGTGACCTGTGTCTCAAACGGTTCACACAGAAATCGAGCCTTAATACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCCTTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTGCCGTCAGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGGCCCTACCAATGCGGCGTCTGCTATCTGAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGGAAAATCCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACTCATAAGCGTATACACACTGGGGAGCGGCCGTTCCAGTGCGCCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGCCCTTACACGTGCGGGCTCTGCCCCGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCTGCCGCCTTCACGTGCAAGCAGTACCTGGAGATACACACGCGCACGCACACCGGCGAGCGCCCCTATCAGTGCGACATCTGTCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAACGGTTCGCGCAAAAGTCCACACTCAACATCCATAAACGAACGCACACAGTGCAAGGTCGGCCGTATCAGTGCATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTATCTGGAGATACACATGCGCACGCATACGGGCGAGAGACCTTTCGAGTGCGATGTCTGTTACAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATACACACCGGAGAACGGCCATATGCCTGTGATATTTGTCAGAAACGATTCGCCGTTAAGAGCTACGTAACAGCGCACAGGTGGTCGCACGTAGCGGACAAGCCTTTGAACTGCGACCGCTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACACCGCCGGCTCCTGCTACGAGTGTAGCGTCTGCGGCCGCACCTTCGTCCGCGACAGCTACCTAATACGACATCACAACCGCGTGCACCGTGAGAATCACAGCAACGTGTCCGCAAATAGCATCGGCACCATCAACAGTGTCGCGACTAACACTAACAACTCCAACAATAGTAACTACGACTCGCCCGGCGTTTGTGACTTAAGtTTTGTACCCATGGTCAACCGTTACATGACCTCGCAAGGGACACAGGTCTCCATGCAAGACACGCAAAGTAAGATGTCGGCCATGTCTCCACAGTCTATCGCGTCGATATcgtcgccgccgccgccgcataCGCCCACTCCGCAGCCTCAGATGACGGGGCAGATGCATCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHPGPPTIVRSDSNHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMEQHQQQEMQQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMEISNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCAVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCAVCLKSFTQKCALNLHEKIHTVQGRPYTCGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMTGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_00022996;
80% Identity
-