Cfag023960.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia fagiglandana
Gene Symbol
-
Assembly
GCA_963556715.1
Location
OY750807.1:10458389-10473129[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00017 0.011 17.2 0.1 3 23 131 151 130 151 0.97
2 18 1.5e-06 9.7e-05 23.6 1.2 1 23 157 179 157 179 0.99
3 18 9.4e-06 0.0006 21.1 2.7 1 23 185 207 185 207 0.99
4 18 1e-06 6.5e-05 24.2 1.4 1 23 222 244 222 244 0.98
5 18 0.00019 0.012 17.0 0.7 1 23 259 281 259 281 0.98
6 18 8.6e-05 0.0055 18.1 3.1 1 23 296 318 296 318 0.98
7 18 6e-07 3.8e-05 24.9 1.5 1 23 333 355 333 355 0.99
8 18 0.0004 0.026 16.0 0.0 1 23 362 384 362 384 0.99
9 18 1.9e-05 0.0012 20.2 2.1 1 23 390 412 390 412 0.99
10 18 0.061 3.9 9.1 1.8 1 23 419 441 419 441 0.98
11 18 1e-06 6.5e-05 24.2 2.3 1 23 447 469 447 469 0.99
12 18 0.07 4.5 8.9 1.8 1 23 476 498 476 498 0.98
13 18 4.1e-06 0.00027 22.2 1.5 1 23 504 526 504 526 0.99
14 18 0.00079 0.05 15.1 0.7 1 23 533 555 533 555 0.99
15 18 4.6e-06 0.00029 22.1 1.9 1 23 561 583 561 583 0.98
16 18 0.0033 0.21 13.1 0.3 1 20 589 608 589 611 0.93
17 18 6.5e-05 0.0041 18.5 1.4 2 23 618 639 617 639 0.96
18 18 5.9e-06 0.00038 21.8 1.4 1 23 645 668 645 668 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAGCCCATGAGCTTCTACACATCCCACGCCCACGTCCACTCCGGCCCGCCCACGATCGTCCGCTCCGACTCGCACGCCATCATCAACATGAACCAGCACCACCCCGAAGACTCCAAGGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAGGACCTGATGGACCAACAACACCAGCAAGATTTACAGCAGGATGACGAGGTTAGTGAGcTAAGCTTTAAAGGAATGGATGATGAAGGCGTCGAAATGGATATGGATGGTCGCCAATGCTCGCAGGGCTTGGGCGTCGATATGGGTTCAGTTCAGACAAAAATGGAAGTATCAAATGGAGGTCAAACAACACCACGATCAAAACCGCAAGCCTGTAAGGTTTGCGGGAAGGTACTCTCGTCCGCTTCATCTTATTACGTTCATATGAAGCTTCATTCCGGAAACAAGCCTTTTCAGTGCACgGTTTGCGACGCAGCTTTCTGCCGCAAACCGTACTTGGAAGTCCACATGCGTACGCACACCGGCGAGAGGCCCTTCCAGTGCGATCTGTGCCTCAAACGCTTCACACAGAAGTCCAGCCTCAACACGCACAAGCGCGTCCACACCGATGAGCACATGCGCGCCTTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTGGCGTCAGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCTGGCCAAGGAACGGCCCTACCAATGCGGCGTCTGCTATCTCAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACATACTGAGGAGCACATACAATCGCTGATCAACAAGGTGCGCCCGTATCAATGCGACATTTGCGACAAGAGGTTCACGCAGAAGTCGAGCCTGGGCACTCATAAGCGTATACACACTGTGCAAGGGCGCCCTTACACGTGCGGGCTTTGCCCGGCGGCCTTCGCCCGCCGCCCCTACCTGGACATTCACTTGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACGTGCAAGCAGTACCTGGAGATTCACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACATCCACAAGCGGACCCACTCAGTACAGGGCCGGCCCTTCCAGTGCCTACAATGCCCGGCCGCCTTCACTTGCAAGCAGTACCTGGAGATCCATAATCGCACGCACACAGGCGAAAGGCCTTATCAGTGCGATGTTTGCCTCAAGAGATTCGCGCAAAAGTCCACACTCAATATACATAAACGAACGCACACAGTGCAAGGTCGGCCGTATCAGTGCATGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACTTGGAGATACACATGCGGACTCACACCGGCGAGAGGCCGTTTGAGTGCGATGTCTGTTACAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATTCACACCGgGGAACGGCCTTATGCCTGTGACATTTGTCAGAAACGGTTCGCCGTCAAGAGCTACGTAACAGCACACAgATGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACCTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCGGCAGGCTCCTGCTACGAGTGCAGCGTCTGCGGCCGCACCTTCGTCCGCGACAGCTATCTAATacgACATCACAATCGCGTGCACCGCGACAACCACAGCAATGTGTCGGCCAACAGCATCGGAACCATCAACAACGTCGCGACCAACACCAACAACTCGAATAATAGCAATTTTGTTGATTCGCCCGGCGTTTGTGACTTAAGCTTTGTTCCTATGGTGAATCGTTATATGACATCGCAAGGAACGCAAGTTTCTATGCAAGATACGAGCAAGATGTCTGCTATGTCGCCACAGTCTATCGCGTCGATATCTTCGCCGCCTCCGCCGCACACCCCCACTCCGCAGCCCCAGATGTCGGGTCAGATGCACCTGGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHSGPPTIVRSDSHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMDQQHQQDLQQDDEVSELSFKGMDDEGVEMDMDGRQCSQGLGVDMGSVQTKMEVSNGGQTTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCGVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPYTCGLCPAAFARRPYLDIHLRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNVSANSIGTINNVATNTNNSNNSNFVDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246112;
90% Identity
iTF_00022996;
80% Identity
-