Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756230.1:9426126-9442123[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00011 0.0099 17.2 0.1 3 23 131 151 130 151 0.97

2 18 1e-06 9e-05 23.6 1.2 1 23 157 179 157 179 0.99

3 18 6.4e-06 0.00056 21.1 2.7 1 23 185 207 185 207 0.99

4 18 4.2e-06 0.00037 21.7 2.6 1 23 222 244 222 244 0.98

5 18 0.0001 0.0089 17.3 0.6 1 23 259 281 259 281 0.98

6 18 5.9e-05 0.0051 18.1 3.1 1 23 296 318 296 318 0.98

7 18 4e-07 3.4e-05 24.9 1.4 1 23 333 355 333 355 0.99

8 18 0.00018 0.016 16.6 2.8 1 23 361 383 361 383 0.98

9 18 1.3e-05 0.0011 20.2 2.1 1 23 389 411 389 411 0.99

10 18 0.041 3.6 9.1 1.8 1 23 418 440 418 440 0.98

11 18 6.9e-07 6e-05 24.2 2.3 1 23 446 468 446 468 0.99

12 18 0.048 4.2 8.9 1.8 1 23 475 497 475 497 0.98

13 18 2.8e-06 0.00025 22.2 1.5 1 23 503 525 503 525 0.99

14 18 0.00054 0.047 15.1 0.7 1 23 532 554 532 554 0.99

15 18 3.1e-06 0.00027 22.1 1.9 1 23 560 582 560 582 0.98

16 18 0.0023 0.2 13.1 0.3 1 20 588 607 588 610 0.93

17 18 4.4e-05 0.0038 18.5 1.4 2 23 617 638 616 638 0.96

18 18 4e-06 0.00035 21.8 1.4 1 23 644 667 644 667 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00011	0.0099	17.2	0.1	3	23	131	151	130	151	0.97
2	18	1e-06	9e-05	23.6	1.2	1	23	157	179	157	179	0.99
3	18	6.4e-06	0.00056	21.1	2.7	1	23	185	207	185	207	0.99
4	18	4.2e-06	0.00037	21.7	2.6	1	23	222	244	222	244	0.98
5	18	0.0001	0.0089	17.3	0.6	1	23	259	281	259	281	0.98
6	18	5.9e-05	0.0051	18.1	3.1	1	23	296	318	296	318	0.98
7	18	4e-07	3.4e-05	24.9	1.4	1	23	333	355	333	355	0.99
8	18	0.00018	0.016	16.6	2.8	1	23	361	383	361	383	0.98
9	18	1.3e-05	0.0011	20.2	2.1	1	23	389	411	389	411	0.99
10	18	0.041	3.6	9.1	1.8	1	23	418	440	418	440	0.98
11	18	6.9e-07	6e-05	24.2	2.3	1	23	446	468	446	468	0.99
12	18	0.048	4.2	8.9	1.8	1	23	475	497	475	497	0.98
13	18	2.8e-06	0.00025	22.2	1.5	1	23	503	525	503	525	0.99
14	18	0.00054	0.047	15.1	0.7	1	23	532	554	532	554	0.99
15	18	3.1e-06	0.00027	22.1	1.9	1	23	560	582	560	582	0.98
16	18	0.0023	0.2	13.1	0.3	1	20	588	607	588	610	0.93
17	18	4.4e-05	0.0038	18.5	1.4	2	23	617	638	616	638	0.96
18	18	4e-06	0.00035	21.8	1.4	1	23	644	667	644	667	0.97

Sequence Information

Coding Sequence: ATGTTCGAGCAGCAGATCAAAGCGGAGCCTATGAGCTACTACACCCATCCACACATACACTCCGGCCCCCCAGCAATAGTCCGATCAGATTCCAACCATGCTATCATCAACATGAACCAGCACCATGCACACCAAGAAGATTCTAAGGACAGCCTGATAGTACAACATCAAGTACAACACCAACAAGAACTCATGGAACAACACCAACAAGATTTGCAGCAACAGGATGATGAGtTGAGCTTTAAAGGAATGGACGATGAAGGAGTTGATATGGACATGGATGGCAGGCAGTGTTCTCagGGTATGGGTGTCGACATGGGATCAGTTCAAACCAAAATGGAAGTCTCAAACGGAGGCGGACAGGCTGGAACTCGTTCAAAACCACAGGCTTGTAAAGTGTGTGGCAAAGTGCTGTCGTCAGCTTCCTCATATTACGTCCACATGAAGCTTCACTCTGGAAACAAGCCCTTCCAGTGTACAGTTTGCGATGCAGCATTCTGCCGCAAGCCGTACCTGGAAGTGCACATGCGCACGCACACAGGGGAACGACCTTTCCAATGTGACCTCTGCCTCAAACGGTTCACACAGAAGTCCAGCCTCAATACGCACAAACGCGTACACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAACTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACATACGGAGGACAACAAACGCGCCCTGCTAGCCAAGGATCGGCCGTACCAATGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCCAGTTTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGAGATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACCCACACCGGCGAGCGGCCTTATCAATGCGACATCTGCCTGAAGCGCTTCACTCAGAAATCAAGCCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGGCCGTTCCAGTGCCTGCAGTGCCCGGCCGCGTTCACCTGCAAGCAGTACCTCGAAATACATAACCGCACGCACACCGGGGAGCGGCCATACCAGTGCGACGTATGCCTCAAGAGATTCGCGCAAAAATCAACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGCCCAGCGGCGTTCACATGCAAGCCCTACTTGGAGATACACATGCGTACGCACACAGGCGAACGCCCGTTCGAGTGCGATGTGTGTTACAAACGGTTCACGCAGAAATCGACGCTCAACATACACAAGCGAATCCATACCGGTGAACGTCCATACGCTTGTGATATTTGTCAAAAACGATTTGCTGTGAAGAGCTATGTAACAGCGCACAGATGGTCTCACGTTGCGGACAAGCCGCTGAACTGCGACCGGTGCTCCATGACGTTCACGAGCAAGTCTCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGGCTCGTGCTACGAGTGCAGCGTGTGCGGCCGGACGTTTGTCAGGGACAGCTATCTTATAAGACACCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCGGCCAATAGCATCGGCACCATCAACAGCGTGGCCACTAACACCAATAACTCCAACAGCAACTATGATTCGCCCGGCGTTTGTGACTTAAGCTTCGTGCCGATGGTGAACCGCTACATGACGTCGCAAGGCACGCAGGTGTCCATGCAGGACACGCAGAGCAAGATGTCGGCCATGTCGCCGCAGTCCATCGCTTCTATATCTTCGCCCCCTCCCCCGCATACGCCTACCCCCCAACCCCAGATGTCGGGTCAAATGCATCTCGCAGACTGA
Protein Sequence: MFEQQIKAEPMSYYTHPHIHSGPPAIVRSDSNHAIINMNQHHAHQEDSKDSLIVQHQVQHQQELMEQHQQDLQQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGGQAGTRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEDNKRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCEICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01246112;
90% Identity: iTF_01076785;
80% Identity: -