Oinc034904.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthosia incerta
Gene Symbol
-
Assembly
GCA_948252205.1
Location
OX411761.1:25976340-25979301[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 7.1 9.7e+02 1.8 0.7 1 21 166 186 166 187 0.93
2 18 0.0018 0.24 13.2 2.0 2 23 194 215 193 215 0.95
3 18 1.6 2.2e+02 3.9 0.8 2 23 219 240 218 240 0.95
4 18 0.89 1.2e+02 4.7 1.6 2 19 275 291 274 294 0.76
5 18 0.19 27 6.8 0.3 2 23 326 348 325 348 0.92
6 18 1.9e-05 0.0026 19.4 1.0 1 23 354 377 354 377 0.97
7 18 0.041 5.6 8.9 0.3 1 21 381 401 381 402 0.94
8 18 3.6e-05 0.005 18.5 0.3 1 23 410 433 410 433 0.97
9 18 0.62 86 5.2 0.9 1 23 438 461 438 461 0.85
10 18 0.015 2.1 10.2 0.3 5 23 476 494 473 494 0.92
11 18 0.0073 1 11.2 1.6 1 23 500 522 500 522 0.98
12 18 0.058 8 8.4 2.1 2 23 528 548 528 548 0.97
13 18 0.00028 0.039 15.7 1.0 2 23 554 575 554 575 0.97
14 18 0.04 5.5 8.9 0.1 2 23 580 600 579 600 0.95
15 18 2.5e-05 0.0035 19.0 3.1 1 23 646 668 646 668 0.98
16 18 0.00071 0.098 14.4 0.9 2 23 674 695 673 695 0.96
17 18 0.046 6.4 8.7 0.8 1 23 701 724 701 724 0.93
18 18 0.024 3.3 9.6 1.3 3 23 731 752 730 752 0.96

Sequence Information

Coding Sequence
ATGGACAATTTCAAAAGGAAGCTAAAAAATGTCCTGTACAGCTCTAAGTTCTGTGGAATATGCTTGGAAAGTGACGAAAATATGAGCACCATTGACGAAGATTTGGAGATTATAGTGAATGAGCAGACTCGTACGAAAGCTTTGCAGGCTATCGCTGATGTAGTGTTTAAAGAGGCCACTTACAGCCTAACAAGTTCACACATATGCAACAGCTGTATGGAAAAACTGATCCAGTCATACATTTTCATAGAAAACGCAAAGGAAACATCGAAGATCTTAGAAAAGTATGTTGATGATTTGGTTAGCAAATCAGATGATATTTTCTATCATTTACCTGCCTCAAATATTGAAGGTACCAATGTTTTTATTGTATTAGAAAATAATATCTGTGATTCCCCTGAAATTAGGGAAGTAAAAGATGAGACTAATATAAAGCCTGAAGAAAAGACTGAAATATTTGAAGAGAAAAAAGAACTTGATTTTAAAAGAAAGAAATTCAAATGTGTGAACTGTCTTTCAAAACTACCCACACACAGAGCGTTAAAGATACATAGAATGAAATGTCAAAAAAAAATTCTACGCTGTGGACTATGTTATAAATCATTTAGAAATATACAAAATTTAAAAGAACATCATGAACTGCATTTGAAAGTAAAATGCAAGTTTTGTAATGAAATACTTCTCAAAAAGGAATTACTGGATCATCTTAAAACAAACCATGGAGAAACTTTAATCAAGTGTTTGAAATGTGAACTATTTTATTCCTTAAAAACTTATCAGACGCATACAAAAGTCTGTCAACAAATGAAACAAGAAAACCTTCAATGCTTGATGTGCCAGAAGACTTTTTCTGAAAACGAATTCATGTCCCATAACTGCAAGTACAGCTGTCCGGAATGTACCGAAGTACCTTGCATGCATTATAAGTACTTAAAGGCATATAAGGAACAGATGTTAAATAATGCAGATAAGGTTGAATGCGTTGACTGTGACTACGTTTGTAAAAGAAAAGAGATCTTACTCGGCCATGTAAATCGAGACCATTTAAATAATCATCCATACACTTGTGATAAATGTGGAAAGCAATTCTATTCTAAAGTTGTCTTAAAAGCTCATATTCTTCGGTTCCACGAAAACTGTTTTGTGTGCCAGTTTTGTGATTCAGAATTCAGTAATATTAACAATTATGAAAGTCATGTGAAGTCCTGTGAGGATGTTAGAAGGGAGTTTGTCTGTGAAAATTGCCCCGCCTCGTTTGATTCCTCAGACAGTTTGACGAATCATGTCAAACGTAGACATAGCACAGATGTTTACCCATGTGGCCTTTGTAACAAAAAGTTCTTAAAAGATTCCAAAAGAAAGGAGCATATGGTTAAAGTACATAGCAGTGTTAAAAAAAATAGGGATAAAAATGTAGAATGCATTGTGTGCCAATCAAAATTTGACAACAAAGGAGAATTGGTACAGCATATGAAATCTCATGGTCCTAACATTACATATCCATGCAGGATTTGCAATACAGAGTATCAGACCCTAAGACAGTTTCGGGCACATAACCGCAAACACAACGGACCATTTGCCACCTGCCATGTTTGTGGGAAAGAAATGAGAGAGATCCTATTAAAAAAACATATGACTACCCACTCAGAATCTGTAGAAACTTGTGAAACCTGTGGCAGGTCTTTTCAAAACATCACTTTGCTAAAATATCATCAGAAAGTTCATTTAGATAGCGTACCCTGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGATTACGCAGACATTGGAGAGGACACCTAATGGAAGAAAATCCTCAAAAAGGAATGAAGAAACAACAGCCAAATTTGAAATGTGAACTGTGTGAATATAAGACATGGAACAACACTCTTTTAGAATGTCATATGAACCGACACCACTTAAAAATAAAACCGTACGTATGCCATATATGTAGCAAAGATTTCATAGGAAAACATTTGCTGAAAAAACATATAGAAACCCATGACATGAAAAGCGTTGTCTGCATGGTATGTCTCAAGAGTTTTGCCAACTCTGCCTGCTTGAAGATGCATCTGCGTTTACATACTGGAGAAAAACCTTTCACTTGTGAGATATGTGGGGACCGATTTCGGTCATCGAGCATTATGAATGTTCACAAGTTGAAAAAGCATTCCGACAAGAGTAACATTTGTCCGTTATGTTCAAACAAGTTTCATACGATCAGGGATTTGAGAAGACATTTGATTAAAGTGCATTGGAAGGAGAAAAATAAAAGATTTGATCCTCGAGAACTGAAAGGGTTGGATGAAAAACATTATCATTTGTTTCATGATGGGAGGAGGGTTAAAGTTGCTGATGAAGATGTTGATTTTTATATGCCTTGTTGA
Protein Sequence
MDNFKRKLKNVLYSSKFCGICLESDENMSTIDEDLEIIVNEQTRTKALQAIADVVFKEATYSLTSSHICNSCMEKLIQSYIFIENAKETSKILEKYVDDLVSKSDDIFYHLPASNIEGTNVFIVLENNICDSPEIREVKDETNIKPEEKTEIFEEKKELDFKRKKFKCVNCLSKLPTHRALKIHRMKCQKKILRCGLCYKSFRNIQNLKEHHELHLKVKCKFCNEILLKKELLDHLKTNHGETLIKCLKCELFYSLKTYQTHTKVCQQMKQENLQCLMCQKTFSENEFMSHNCKYSCPECTEVPCMHYKYLKAYKEQMLNNADKVECVDCDYVCKRKEILLGHVNRDHLNNHPYTCDKCGKQFYSKVVLKAHILRFHENCFVCQFCDSEFSNINNYESHVKSCEDVRREFVCENCPASFDSSDSLTNHVKRRHSTDVYPCGLCNKKFLKDSKRKEHMVKVHSSVKKNRDKNVECIVCQSKFDNKGELVQHMKSHGPNITYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHMTTHSESVETCETCGRSFQNITLLKYHQKVHLDSVPCPKCKKMINPARLRRHWRGHLMEENPQKGMKKQQPNLKCELCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSACLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNICPLCSNKFHTIRDLRRHLIKVHWKEKNKRFDPRELKGLDEKHYHLFHDGRRVKVADEDVDFYMPC