Msep025687.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061190.1:3198015-3211485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5 1.4e+02 4.2 0.8 1 21 329 349 329 350 0.94 2 17 0.0059 0.56 11.8 3.2 1 23 356 378 356 378 0.98 3 17 0.25 24 6.7 5.2 2 23 438 458 437 458 0.97 4 17 0.021 2 10.1 0.6 2 23 489 511 488 511 0.95 5 17 7.8e-05 0.0074 17.7 1.9 1 23 517 540 517 540 0.97 6 17 0.11 11 7.8 0.2 1 20 544 563 544 565 0.93 7 17 0.3 29 6.4 1.6 1 23 573 596 573 596 0.96 8 17 1.3 1.2e+02 4.4 1.0 1 23 601 624 601 624 0.85 9 17 0.00016 0.016 16.7 0.1 2 23 637 658 636 658 0.96 10 17 0.011 1 10.9 1.6 1 23 664 686 664 686 0.98 11 17 0.3 29 6.4 1.9 2 23 692 712 692 712 0.96 12 17 0.00043 0.041 15.4 1.0 2 23 718 739 718 739 0.97 13 17 0.06 5.7 8.6 0.1 2 23 744 764 743 764 0.95 14 17 3.8e-05 0.0037 18.7 3.1 1 23 810 832 810 832 0.98 15 17 0.0016 0.15 13.6 1.4 2 23 838 859 837 859 0.96 16 17 0.07 6.7 8.4 0.8 1 23 865 888 865 888 0.93 17 17 0.037 3.5 9.3 1.3 3 23 895 916 894 916 0.96
Sequence Information
- Coding Sequence
- ATGCCAgAACCTGTTACTTCACAATCGGACTCTGTAGATATGCAGGCACACACTCAAAAAGCTGTGGAAGAGAAGCAAATCAAGGAAAATCTAGATCCTATTACTTCACCTAGATGTGCCACAGTTTCTAGACATTATGTGCCTATACATGCTACAGTTGCTGTGGAAGATGTACAAAGTAACCAAAATCGTGATCCTATTACTTCACCTAGATGTGCCACAGTTTCTAGACATTATGTGCCTATACATGCTACAGTTGCTGTGGAAGATGTACAAAGTAACCAAAATCGTgATCCTATTACTTCACCTAGATGTGCCACAGTTTCTAGACATTATGTGCCTATACATGCTACAGTTGCTGTGGAAGATGAACAAAGTAACCAAAATCGTGATCCTATTACTTCACCTAGATGTGCCACAGTTTCTAGACATTATGTGCCTAAACATGCTACAGTTGCTGTGGAAGATGTACAAAGTAACCAAAATCGTgGCTTTGAAAAGATGGAGAGTTTCAAACTGAAGCTTAAAAATGTTCTGCACAGCTCCAAGTTTTGTGGGATATGCTTGGAAAATGACGAAAGTATGAGTACCGTCGACGAGGATCTAGAGATCATAATTAATGAACGGACTTTTACGAAGCCTTTGCAGGGACTCATTGATTTTGTGTTTAAAGAGGCCATTAACCTAGCAAGTTCAAATGTATGCAACAGCTGTTTGGAAAAGCTGATCCAGTCTTACATTTTCATAGAAAACGCCAAAGAAACATTACGGATATTAGACAATTATGTAAATGATTTGTTTAGCAAATCTGATGATGTTTTTAATCACTTACCGGAGTCAAACGTAGAAGTTACAAATGTTGTTATtgtattagaaaataatattcatgGTTCAGTCGAAGTAAAAGATGAATCTAAtataaaagttgaaaaaaataatgaaataattgaaGAGGAAAATACATTGCCTTCGATTAGAAAGAAATTCAAATGTGTGAAATGTCAGTCAATGCTACCGACACACAGAGCtttgaaaatacataaaatgaaatgtaaGAAACCGATATTCCGATGCAGAATATGTTTTAAGCTATTtagaaataaactaaattttaaagCACACAGTGAAACACATTTGAAAGTTAAATGCAAGTTCTGTCATGAAATAGTTCTTAAGAAAGAGTTATtggaacattttaaaacaaaccatGGAGACACTTTGATTAAGTGTTTGAAATGTGAAGTATGTTATTCTTTAGAAACATATCAATGTCACGCTAAAGTCTGCCAACAAATTGAGGAAGACAAACAGCAATGTTTAATGTGTCTGAAGACTTTTACGAAGAACGATTTTAAGTCCCATATCTGCAAGCATAGTTGTCCGGAATGTACGGACGTACCTTGCATGCACTATAAGTACTTGAAATCTTATAGAGAACAGATCTTAAACAATGCTGACAAAATCAAATGTGTTGACTGTGACTATGTTTGTAAAAGAAAAGAGGTATTACTCGGACACGTAAACCGGGACCATTTACATCATCATCCGTACACCTGTGACAAATGTGGAAAACAATTTCATTCTAAAGCTGTCTTACGAGCTCATATTCTCAGATTCCACGAGAACTGTTTTGTGTGCCAGTTTTGTGACTCAGAGTTCAGCAATATTAACAATTATGAAAGTCATGTGGAATCCTGTGAGGATATAAAAAGGGAGTTCGCTTGTGAGAATTGTCCAGCCTCTTTTGATTGTACTGATAAGTTGACGAACCATGTGAAACGAAGACATAGCACAGACATCTTTCCATGTGGCCTCTGCAATAAAAAGTTCCTTAAAGATTCTAAAAGAAAAGAACATATGGTTAAAGTTCACAGCGGACTCGAAATGAAAAATAGGGTTAAAAATTTGGAATGTGTCGTGTGCCAAGAACCATTTGATAACAAAGGAGATTTGGTGCAGCATATGAAATCTCATGGTCCCAACATAACATATCCATGTAGGATCTGCAATACAGAGTATCAGACTTTGAGACAGTTTCGGGCACATAACCGCAAACACAATGGACCGTTTGCCACGTGCCATGTTTGTGGTAAAGAAATGAGGGAGATTCTACTGAAGAAACATTTGACTACACACTCCGATTCGATAGAAACTTGTGAGACATGTGGCAGATCTTTTCAAAACATCACTTTATTAAAATACCATCAGAAAGTTCATTTAGAAAGTGTCCCTTGTCCTAAGTGTAAGAAAATGATCAACCCAGCGAGACTACGCAGGCATTGGAGAGGACACCTCATGGAAGAAAATCCTGAGAAAGGAATGAAAAAACAACAGCCCAACTTGAAATGTAAATTATGTGAATATAAGACTTGGAACAACACACTATTAGAGTGTCATATGAACCGACATCACTTAAAAATAAAGCCCTATGTCTGCCATATATGCAGCAAAGATTTCATAGGAAAACATTTACTGAAAAAGCATATCGAAACACATGACATGAAAAGCGTTGTCTGCATGGTATGTCTGAAGAGTTTTGCCAATTCCACCTGCTTGAAAATGCATCTGCGTTTACACACAGGAGAAAAACCATTTACTTGTGAAATTTGTGGAGACCGATTTCGGTCATCAAGTATTATGAATGTTCACAAGTTAAAGAAGCATTCAGACAAGAGTAATATTTGTCCGTTATGTTCAAATAAATTTCATACAATTAGAGATTTGAGGAGACATTTGATAAAAGTGCATTGGAAGGAAAAGAATAAGAGGTTTGACCCTCGAGAGTTGAAAGGACTGGATGAGAAGCACTATCATTTGTTCCATGATGGTAGAAGAGTTAAAGTTGCTGAGGAAGATGTCGATTTTTATATGCCTTgttga
- Protein Sequence
- MPEPVTSQSDSVDMQAHTQKAVEEKQIKENLDPITSPRCATVSRHYVPIHATVAVEDVQSNQNRDPITSPRCATVSRHYVPIHATVAVEDVQSNQNRDPITSPRCATVSRHYVPIHATVAVEDEQSNQNRDPITSPRCATVSRHYVPKHATVAVEDVQSNQNRGFEKMESFKLKLKNVLHSSKFCGICLENDESMSTVDEDLEIIINERTFTKPLQGLIDFVFKEAINLASSNVCNSCLEKLIQSYIFIENAKETLRILDNYVNDLFSKSDDVFNHLPESNVEVTNVVIVLENNIHGSVEVKDESNIKVEKNNEIIEEENTLPSIRKKFKCVKCQSMLPTHRALKIHKMKCKKPIFRCRICFKLFRNKLNFKAHSETHLKVKCKFCHEIVLKKELLEHFKTNHGDTLIKCLKCEVCYSLETYQCHAKVCQQIEEDKQQCLMCLKTFTKNDFKSHICKHSCPECTDVPCMHYKYLKSYREQILNNADKIKCVDCDYVCKRKEVLLGHVNRDHLHHHPYTCDKCGKQFHSKAVLRAHILRFHENCFVCQFCDSEFSNINNYESHVESCEDIKREFACENCPASFDCTDKLTNHVKRRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSGLEMKNRVKNLECVVCQEPFDNKGDLVQHMKSHGPNITYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHLTTHSDSIETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLMEENPEKGMKKQQPNLKCKLCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNICPLCSNKFHTIRDLRRHLIKVHWKEKNKRFDPRELKGLDEKHYHLFHDGRRVKVAEEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- -
- 80% Identity
- -