Mimp053185.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990367.1:2249434-2252096[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.3 9.9e+02 2.3 0.1 1 21 163 183 163 184 0.93 2 17 0.89 1.4e+02 5.0 10.1 1 23 190 212 190 212 0.98 3 17 1.4 2.2e+02 4.4 5.3 2 23 272 292 271 292 0.96 4 17 0.05 7.8 8.9 0.6 2 23 323 345 322 345 0.95 5 17 0.00011 0.017 17.3 1.1 1 23 351 374 351 374 0.97 6 17 7.7 1.2e+03 2.0 0.9 1 16 378 393 378 399 0.83 7 17 0.0013 0.21 13.9 0.2 1 23 407 430 407 430 0.96 8 17 1.1 1.7e+02 4.7 1.0 1 23 435 458 435 458 0.85 9 17 0.0015 0.23 13.7 0.2 2 23 471 492 470 492 0.97 10 17 0.0069 1.1 11.6 0.3 1 23 498 520 498 520 0.98 11 17 0.25 40 6.7 1.9 2 23 526 546 526 546 0.96 12 17 5.2e-05 0.0081 18.3 1.2 2 23 552 573 552 573 0.97 13 17 0.051 8 8.9 0.2 2 23 578 598 577 598 0.96 14 17 3.2e-05 0.005 19.0 3.0 1 23 644 666 644 666 0.98 15 17 0.00031 0.049 15.9 0.4 2 23 672 693 671 693 0.96 16 17 0.067 10 8.5 0.5 1 23 699 721 699 721 0.96 17 17 0.094 15 8.1 1.1 3 23 728 749 727 749 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGTATCAAATTgaagtttaaaaatattctgCACAGCTCGAAGTTTTGTGGAATATGCTTGGAAAGTAACGAAAGTATGAGCACCATCGATGAGGACCTAGAGATTATTGTTAATGAACGAACTCATGCGAAGCCTTTGCGGGGTCTAATTGATGTAGTGTTCAAAgagGCCAATCACAGCCTAGCAAGTTCATATGTATGCAACAGCTGTTTGGAAAAACTAATCCAGTCTTTCATTTTCATAGAAACTGCTATAGAAACATCCCAGATTTTTAACAATTATGTAAACGATTTATTTAGCATATCtaatgatatttttaatcaCTTACCAGAGTCAAAAATTGAAATTACAAATGTTGTTATtgtattagaaaataatattaatgactCTCTTGAAGTAAAAGATGAATCTAATATACAGGCcgacaaaaataatgaaatttttgAAAAGAACAATGAATCCAATATTATAAGAAAGAAATTCAAATGTGTGGGATGTCTGTCAATGCTACCTACACACAGAGCCTTGAAAATACATAGAATGGAATGTAAGAAGCAGATATTCCGATGTAGAACATGTTGCAAACTATTTAGAAATAAAGAACATTTAAAAGCACATCATAAACTGCATTTGAAAGTAAAATGCAAGTTCTGTCATAAAATACTTCTCAAGAAAGAATTACTGGGCCATTTTAAAAGAAACCATGGAGATAATTTGATTGAATGTTTGAAATGtgaattattttattcgttAAAAACATACCAAAGTCACACTAAAGTCTGCCAACAAATTAAAGAAGACAAACAGCAATGCTTGATGTGTCTGAAGACTTTTACTGCAAACAAATTGAAGTCCCATAAGTGTAAACATAATTGTCCGGAATGTACGGAAGTACCTTGCATGCATTACAAGTATTTGAAGTCTTATAGAGAACAGGTCTTAAACAATTCTGACAAAATCAAATGCGTTGACTGTGACTACGTTTGTAAAAGAAAAGAGATATTACTTGGACACATAAACCGGGACCATTTAAACCATCATCCATATACTTGTGACAAATGTGGAAAACAGTTTTATTCCAAATTGGTCTTAAGAGCTCATATTCTTAGATTTCACGAGAACTGTTTTGTGTGCCAGTTTTGTGACTCGGAATTCAGTAATATTATCAATTATGAATGTCATGTGGAATCctgtgaaaatataaaaagggTGTTTGCTTGTGAGAACTGTCCAGCCTCGTTTGATTCTTTTGATGGTTTGACGAACCATGTGAAACGAAGACATAGCACAGATATCTTCCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCCAAAAGAAAAGAGCATATGGTTAAAGTTCATAGTGaccttgaaattaaaaacagggTAAAACATGTGCAATGTGTTGTGTGTCTAGAACCGTTTGATAACAGAAGAGATTTGTTGCAGCATATGAAATCTCATGGTGCTGATGTAACATATCCATGTATGATCTGCAACGCAGAGTATCCGACTTTGAGACAGTTTCAAGCACATAACCGCAAACACAGAGGGCCATATGCCACATGCCATGTTTGTGGTAAAGAAATGAGAGAGATCCTgctgaaaaaacatttaactacGCACTCGAATGCGGTAGAAACTTGTGAAACATGTGGGAGATCTTTTCGAAATATCACTTTACTAAAATATCATCAGAAAGTTCATTTAGAAAGTGTCCCTTGCCCTAAGTGTGAGAAAATGATCAACCCCGCGAGACTACGCAGGCATTGGAAACGACATCTGATGGAAGGAAATCCTAAGGAAGGAATGAAAAAACAACAGCCTAACATGAAATGTAACCTGTGTGAGTATAAGACCTGGAACAATACACTACTAGAATGTCATATGAACCGACACCACTTAAAAATAAAGCCCTATGTCTGTCATATATGCAGCAAAGACTTCATCGGAAAACATTTGTTGAGAAAACATATTGAAACGCATAACATGAGAAACGTTGTCTGTATGGTATGTATGAAGAGTTTTGCCAATTCTAGCTCTTTGAAAATGCATCTGCGTTTACACACGGGAGAAAAGCCATTCACTTGTGAAATTTGTGGGGACCAGTTTCGGTCATCAAGTATTATGAACGTACATAAGTTGAAGCATTCGGACAAGAGTAAGATTTGTCCATTATGTTCAAATAAATTTCATACAATCAGAGATGTGAGGAGACATATGATACGAGTGCATTGGAAGCAAAAAGATAAGAGATTTGATCCTCGAGAGTTGAAAGAATTAGATGAAAAATACTATCATTTGTTTCATGATGGTAGAAGAGTTAGAGTTGGTGATGAAGATGTTGAGTTTTAA
- Protein Sequence
- MESIKLKFKNILHSSKFCGICLESNESMSTIDEDLEIIVNERTHAKPLRGLIDVVFKEANHSLASSYVCNSCLEKLIQSFIFIETAIETSQIFNNYVNDLFSISNDIFNHLPESKIEITNVVIVLENNINDSLEVKDESNIQADKNNEIFEKNNESNIIRKKFKCVGCLSMLPTHRALKIHRMECKKQIFRCRTCCKLFRNKEHLKAHHKLHLKVKCKFCHKILLKKELLGHFKRNHGDNLIECLKCELFYSLKTYQSHTKVCQQIKEDKQQCLMCLKTFTANKLKSHKCKHNCPECTEVPCMHYKYLKSYREQVLNNSDKIKCVDCDYVCKRKEILLGHINRDHLNHHPYTCDKCGKQFYSKLVLRAHILRFHENCFVCQFCDSEFSNIINYECHVESCENIKRVFACENCPASFDSFDGLTNHVKRRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSDLEIKNRVKHVQCVVCLEPFDNRRDLLQHMKSHGADVTYPCMICNAEYPTLRQFQAHNRKHRGPYATCHVCGKEMREILLKKHLTTHSNAVETCETCGRSFRNITLLKYHQKVHLESVPCPKCEKMINPARLRRHWKRHLMEGNPKEGMKKQQPNMKCNLCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLRKHIETHNMRNVVCMVCMKSFANSSSLKMHLRLHTGEKPFTCEICGDQFRSSSIMNVHKLKHSDKSKICPLCSNKFHTIRDVRRHMIRVHWKQKDKRFDPRELKELDEKYYHLFHDGRRVRVGDEDVEF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_01026770; iTF_01026621;
- 80% Identity
- -