Taur027543.1
Basic Information
- Insect
- Tiliacea aurago
- Gene Symbol
- -
- Assembly
- GCA_948098905.1
- Location
- OX402602.1:17857966-17861817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3 2.5e+02 3.1 0.1 1 21 164 184 164 185 0.93 2 17 0.00045 0.038 15.1 4.0 2 23 192 213 191 213 0.97 3 17 0.31 26 6.1 1.7 2 23 217 238 216 238 0.97 4 17 0.00076 0.064 14.4 2.0 2 23 324 346 323 346 0.96 5 17 0.0019 0.16 13.1 2.1 1 23 352 375 352 375 0.97 6 17 0.073 6.1 8.1 1.4 1 20 379 398 379 400 0.94 7 17 0.00028 0.024 15.7 0.1 1 23 408 431 408 431 0.97 8 17 0.43 36 5.7 1.0 1 23 436 459 436 459 0.91 9 17 0.0014 0.12 13.5 0.1 2 23 472 493 471 493 0.97 10 17 0.0075 0.63 11.2 1.6 1 23 499 521 499 521 0.98 11 17 0.34 29 6.0 2.4 2 23 527 547 527 547 0.96 12 17 0.0003 0.026 15.6 1.7 2 23 553 574 553 574 0.97 13 17 0.14 12 7.3 0.1 2 23 579 599 578 599 0.95 14 17 2.6e-05 0.0022 19.0 3.1 1 23 646 668 646 668 0.98 15 17 0.0011 0.093 13.9 1.4 2 23 674 695 673 695 0.96 16 17 0.048 4 8.7 0.8 1 23 701 724 701 724 0.93 17 17 0.0021 0.18 13.0 0.4 1 23 729 752 729 752 0.96
Sequence Information
- Coding Sequence
- ATGGACAGTTTCAAGTTGAAACTCAAAAATGTCCTTCACAGTACAAAGTATTGTGGGATATGCTTAGAAAGAGACGATAATATGAGCACCATTAACGAAAACCTGGAGATCATTGTGAATGAACGGACTCGCACGAAATCTTTGAAGGCTTTAATTGATGTAGTGTTTAAAGCGACCAGCCTAGCAAGTTCATTCTTATGCAACAGTTGTATGGAGAAACTGATTCAGTCATACATTTTCATAGAAAATGCGAAGGAAACATCCAAGATTTTAGACAACTGTGTCAATGATTTATTTAGCAAATCGGGAGATATTTTCAATCATTTGCCAGAGTCAAGCATTGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATATCCATGATTCTCCAGAAAAAAGGGAAATGAAAGATGAGTTTAACATAATAGCGGAAGAAAATAATGAAATCGTTGAAGTGAAAAAACAATTTACTTTAAAAAGAAAGAAATTCAAATGCGTGAAATGTTTGGTAATGTTACCCTCACTCAGAGCGTTAAAGATGCATAGAATGAAATGTAAGAAGCAGATATTACGATGTAGACTATGTGTTAAGATATTTAAAAATAAAAAACATTTAAATGTACATTACAAAATGCATTCGAAAGTGAAATGCAAATTTTGTCCTGAAATACTTCATAAAAAGGAATTATTGGACCATCTTAAAACTAACCATGGAGATTCCTTACTCAAATGTTTGAAATGTGAACTGTTTTATTCCTTAAAAACGTTTCAAACTCACACTAAAGTCTGCCGACAAATAAAAGAAGGAAAACCACAATGCTTGATGTGTCTTAAGACCTATACTGAAAAAGAATTCAAGTCCCATTCCTGCAGGTATAGGTGCCCAGAATGTACTGAAATACCTTGCATGCATTACAAGTATTTGAAGTCTTACAGGGAACAGACTTTAAACAAGGCAGACAAGATCAAATGTGTTGACTGCGACTATGTTTGTACAAGAAAAGACCATTTACTTGGACATGTGAATAAGGACCATTTAAACAATCATCCATACACTTGTGATAAATGTGGACAACAGTTTCATTCTAAACTAGTTTTAAAAGCTCATATTCTTAGGTTCCATGAAAACTGTTTTGTGTGCCGGTATTGTGATTCAGAATTTTGTAATATTAACAATTACAAAAGTCATGTAATATCCTGTGAGGATATCAAAAGGGTGTATGCCTGTGACAATTGTCCGGCCTCTTTTGATGCCTCTGACAGTTTGACGAACCATATAAAACGTAGACATAGCATGGATATTTTCCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGAAAAGAGCATATGATTAAAGTGCATAGTAGTCTCCAAATTAAGAATAGAGAAAAAAATGTAGAATGTGTTGTGTGTCAGGGGAAGTTTGATAATAAAGGAGAATTGGTGCAGCATATGAAATCTCATGGTCCGCATACTACGTATCCATGCAGGATATGCAATACAGAGTACCAAACTCTGAGACAGTTTCGGGCGCATAATCGCAAACATAATGGACCATTTGCTACATGCCATGTTTGTGGCAAGCAGATGAGAGAAATCCTACTAAAAAAACATCTGACTACCCACTCAGATTCTGTAGAAACATGCAAAACTTGTGGCAGGTCTTTTCAAAACATCACTCTATTAAAATACCACCAGAAAGTTCATTTAGAAAGTGTTCCATGTCCTAAGTGTGAGAAAATGATCAACCCAGCCAGACTACGGCGGCACTGGAAAGGGCATCTCATGGAAGAGAATCCTGTTCAAAAAGGGATTAGGAAACAACAGCCAAACTTGAAATGTGAACAGTGTGAATATAAGACATGGAACAACACACTTCTGGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATATGTCTGCCATATATGCAGCAAAGACTTCATAGGAAAACATTTGCTGAAAAAGCATATTGAAACGCATGACATGAAAAGCGTTGTCTGTATGGTGTGCCTGAAGAGTTTCGCCAACTCGACTTGCTTGAAAATGCATTTGCGCTTGCACACAGGTGAAAAACCTTTCACCTGTGAAATATGTGGGGACCGATTTCGGTCATCAAGCATTATGAACGTGCACAAGTTAAAAAAACATTCTGGCAAGAGTTATATTTGTCCATTATGTTCAAATAAGTTTTATACTGTACGGGATTTGCGAAGACATGTGATTAAAGTACATTGGAAGCAGAAAAATAAGAGGTTTGACCCTCGAGAGTTGAAAGGGCTAGATAAAGAACATTATCATTTGTTTCATGATGGTAGGAGAGTTAAAGTTGCTGACGAAGATGTCGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MDSFKLKLKNVLHSTKYCGICLERDDNMSTINENLEIIVNERTRTKSLKALIDVVFKATSLASSFLCNSCMEKLIQSYIFIENAKETSKILDNCVNDLFSKSGDIFNHLPESSIESTNVVIVLENNIHDSPEKREMKDEFNIIAEENNEIVEVKKQFTLKRKKFKCVKCLVMLPSLRALKMHRMKCKKQILRCRLCVKIFKNKKHLNVHYKMHSKVKCKFCPEILHKKELLDHLKTNHGDSLLKCLKCELFYSLKTFQTHTKVCRQIKEGKPQCLMCLKTYTEKEFKSHSCRYRCPECTEIPCMHYKYLKSYREQTLNKADKIKCVDCDYVCTRKDHLLGHVNKDHLNNHPYTCDKCGQQFHSKLVLKAHILRFHENCFVCRYCDSEFCNINNYKSHVISCEDIKRVYACDNCPASFDASDSLTNHIKRRHSMDIFPCGLCNKKFLKDSKRKEHMIKVHSSLQIKNREKNVECVVCQGKFDNKGELVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREILLKKHLTTHSDSVETCKTCGRSFQNITLLKYHQKVHLESVPCPKCEKMINPARLRRHWKGHLMEENPVQKGIRKQQPNLKCEQCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00037168;
- 80% Identity
- -