Xict033110.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421956.2:14934424-14945967[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00092 0.098 14.3 5.4 2 23 322 343 321 343 0.96 2 17 0.43 46 5.9 1.7 2 23 347 368 346 368 0.97 3 17 9 9.6e+02 1.8 3.1 2 21 403 421 403 422 0.88 4 17 0.00052 0.056 15.1 0.7 2 23 454 476 453 476 0.96 5 17 0.00022 0.024 16.2 0.8 1 23 482 505 482 505 0.97 6 17 0.022 2.3 10.0 0.1 1 20 509 528 509 530 0.93 7 17 0.00036 0.039 15.6 0.2 1 23 538 561 538 561 0.96 8 17 0.88 94 4.9 0.9 1 23 566 589 566 589 0.85 9 17 0.00015 0.016 16.8 0.1 2 23 602 623 601 623 0.97 10 17 0.01 1.1 11.0 1.6 1 23 629 651 629 651 0.98 11 17 0.47 51 5.8 2.4 2 23 657 677 657 677 0.96 12 17 0.0004 0.043 15.4 1.0 2 23 683 704 683 704 0.97 13 17 0.057 6.1 8.7 0.1 2 23 709 729 708 729 0.95 14 17 3.6e-05 0.0039 18.7 3.1 1 23 776 798 776 798 0.98 15 17 0.0015 0.16 13.6 1.4 2 23 804 825 803 825 0.96 16 17 0.066 7 8.5 0.8 1 23 831 854 831 854 0.93 17 17 0.0031 0.33 12.6 0.4 1 23 859 882 859 882 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCTGAGAAAAACTGCTGTGTCCCTGGGTGTTCTGGGAATTCTGATTCCCCCAATGTCTTGCATCTTTTTCCGAACCCTGCGAAGGATATGGATCGCTTCATGTCATGGGTCTTTAATATTGGTGGGGACATCTTGAAATTCTGTAATGAGTACATATACAAAAATCGGCGAGTTTGTCATGCTCATTTTGAAGTCAAATATTGTTGCCGTTATAATCGAATCAGCAATAATGCTGTGCCATCATTAAATTTGCCAGGCCTATCAGCACTCAAGTTCACTACTACTTCAATAGAAAGAAGACCTTTGAAATCGATTGAAAAAGTGTCCAACATTTTGCCGTCTACTTCTAAAGGTCTTGAGAAGATGGACAGTTTCAAGTTGAAGCTCAAAAATGTCCTTCacagtacaaaatattgtgggATTTGCTTGGAAAGTGACGATAATATGAGCACCGTTAACGAAAATCTGGAGATCATTGTGAATGAACGGACTCGCACGAAAGATTTGAAGGCTATCGTTGATGTAGTGTTTAAAGAGACTACTTACAGCCTAGCAAGTTCACTGATATGCAACAGTTGTGTGGAAAAACTGATTCAGTCATACACATTCATTGAAAGTGCGAAGGAAACATCCAAGATTTTAGACAACTATGTCAACGATTTGTTTAGCAAGTCAGATGATATTTTCAATCATTTGCCGAAGTCGAGCATTGAAAGTACAAATGTTGTTATTGTATTAGAAAACAATATCCATGATTCTTCTGAGAAAAAGGCAAGAAAAGATGATTTTAACATAATGgcggaaaaaaataatgaaatatttgaaGTGAAAAAAGAATTTACTCCatatacatactctcgaaaaaaaaagaaattcaaatgtGTAAAATGTCTGGTAATGCTACATTCACTCAGAGCGTTAAAGATGCATAGAATGAAATGTAAGAAGCAGATATTACGATGTAGACTATGTTTTAagacatttaaaactaaacaacATTTAAATGTACATTACAAACTGCATTTGAAAGTGAAATGCAAATTTTGTCCTGAAATACTTCATAAAAAGGAGTTACTGGACCATCTTAAAACTAACCATGGAGATTCTTTACTCAAATGTTTGAAATGTGAACTGTTTTACTCCTTAAAATCTATTCAAACTCACACTAAAGTCTGCCgacaaataaaagaagaaatacCTCAATGTCTGATGTGCCTAAAGACCTTTACTGAAAAAGAATTCAATTCCCATACATGCAAGTACAGCTGCCCAGAATGTACTGAAATACCTTGCATGCATTATAAGTATCTGAAGTCTTATAGGGAACAGACTTTAAACAACGTAGACAAGATCAAATGTGTTGACTGCGACTATGTTTGTACAAGAAAAGAGAATTTACTTGGACATGTGAATAAGGTCCATTTAAACAATCATCCATATACATGTGACAAATGCGGACAACAGTTCTAttctaaaatagttttaaaagctCATATTCTTCGGTTTCatgaaaactgttttgtgtGCCAGTATTGTGATTCAGAATTTAGTAATATTAACAATTATGAAAGTCATGTAATATCCTGTGAGGATATTAAAAGGAAGTTTGCGTGTGACAATTGTCCAGCTTCTTTTGATTTGTCTGACAGTTTGACGAACCATATAAAACGTAGACATAGCACTGACATTTACCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGGAAAGAGCATATGGTTAAAGTACATAGCAATCTCCAAGTTAAGAAAAGGGATACAAATGTAGAATGTGTTGTGTGCCAAGAGAAGTTTGATAATAAAGGAGAATTGGTGCAGCATATGAAATCTCATGGTCCGCATACTACGTATCCATGCAGGATATGCAATACAGAGTATCAGACTCTGAGACAGTTTCGGGCACATAATCGCAAACACAATGGACCATTTGCTACATGTCATGTTTGTGGTAAGCAAATGAGAGAAATCTTACTAAAAAAACATCTGACTACCCACTCAGATTCTGTAGAAACATGTGAGACTTGTGGCAGGTCTTTTCAAAACATCACTCTATTAAAATACCACCAGAAAGTTCACTTAGAAAGTGTCCCATGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGACTACGCAGGCATTGGAGAGGCCATCTAATGGAAGAGAATCCTGCTCAAAAAGGGATTAGGAAACAACAGCCAAACTTGAAATGTGAACAGTGTGAATATAAGACATGGAACAACACCCTTTTAGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATATGTCTGCCATATATGCAGTAAAGACTTCATAGGAAAACATTTGCTGAAAAAGCATATTGAAACGCATGACATGAAAAGCGTCGTCTGTATGGTGTGCCTGAAGAGTTTTGCCAACTCTACTTGCTTGAAAATGCATTTGCGTCTTCACACAGGTGAAAAGCCATTTACTTGTGAAATATGTGGCGACCGATTTCGGTCATCAAGCATTATGAACGTACACAAGTTGAAAAAACATTCTGGCAAGAGTTATATTTGTCCGCTAtgttcaaataaattttatactaTAAGGGATTTACGAAGACATGTGATTAAAGTGCATTGGAAGCAGAAAAATAAGAGGTTTGACCCTCGAGAGTTGAAAGGGCTAGAAAAAGAACATTATCATTTGTTTCATGATGGTAGAAGAGTTAAAGTTGCTGACGAAGATGTCGACTTTTATATGCCTCGTTGA
- Protein Sequence
- MSSEKNCCVPGCSGNSDSPNVLHLFPNPAKDMDRFMSWVFNIGGDILKFCNEYIYKNRRVCHAHFEVKYCCRYNRISNNAVPSLNLPGLSALKFTTTSIERRPLKSIEKVSNILPSTSKGLEKMDSFKLKLKNVLHSTKYCGICLESDDNMSTVNENLEIIVNERTRTKDLKAIVDVVFKETTYSLASSLICNSCVEKLIQSYTFIESAKETSKILDNYVNDLFSKSDDIFNHLPKSSIESTNVVIVLENNIHDSSEKKARKDDFNIMAEKNNEIFEVKKEFTPYTYSRKKKKFKCVKCLVMLHSLRALKMHRMKCKKQILRCRLCFKTFKTKQHLNVHYKLHLKVKCKFCPEILHKKELLDHLKTNHGDSLLKCLKCELFYSLKSIQTHTKVCRQIKEEIPQCLMCLKTFTEKEFNSHTCKYSCPECTEIPCMHYKYLKSYREQTLNNVDKIKCVDCDYVCTRKENLLGHVNKVHLNNHPYTCDKCGQQFYSKIVLKAHILRFHENCFVCQYCDSEFSNINNYESHVISCEDIKRKFACDNCPASFDLSDSLTNHIKRRHSTDIYPCGLCNKKFLKDSKRKEHMVKVHSNLQVKKRDTNVECVVCQEKFDNKGELVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREILLKKHLTTHSDSVETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLMEENPAQKGIRKQQPNLKCEQCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTIRDLRRHVIKVHWKQKNKRFDPRELKGLEKEHYHLFHDGRRVKVADEDVDFYMPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00037168;
- 80% Identity
- -