Mper004425.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376668.1:13562607-13565776[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.93 71 4.6 0.5 1 21 166 186 166 187 0.94 2 18 0.0055 0.42 11.6 7.1 1 23 193 215 193 215 0.97 3 18 3.2 2.4e+02 2.9 0.7 2 23 219 240 218 240 0.94 4 18 3.6 2.7e+02 2.8 0.5 2 19 246 262 245 265 0.76 5 18 0.019 1.4 9.9 0.9 2 23 326 348 325 348 0.95 6 18 2.1e-05 0.0016 19.2 0.8 1 23 354 377 354 377 0.97 7 18 0.049 3.7 8.6 0.3 1 21 381 401 381 402 0.94 8 18 3.6e-05 0.0027 18.5 0.3 1 23 410 433 410 433 0.97 9 18 0.25 19 6.4 1.0 1 23 438 461 438 461 0.92 10 18 0.0015 0.11 13.4 0.3 5 23 477 495 474 495 0.92 11 18 0.01 0.76 10.8 1.5 1 23 501 523 501 523 0.98 12 18 1.1 84 4.4 1.1 2 23 529 549 529 549 0.94 13 18 0.00028 0.021 15.7 1.0 2 23 555 576 555 576 0.97 14 18 0.025 1.9 9.5 0.1 2 23 581 601 580 601 0.96 15 18 2.5e-05 0.0019 19.0 3.1 1 23 647 669 647 669 0.98 16 18 0.0015 0.12 13.4 1.5 3 23 676 696 674 696 0.96 17 18 0.046 3.5 8.7 0.8 1 23 702 725 702 725 0.93 18 18 0.0061 0.46 11.5 0.8 2 23 731 753 731 753 0.95
Sequence Information
- Coding Sequence
- ATGGTCAGTTTCAAACTAAAGCTTAAAAATATCCTGCACAGCTCAAAATTCTGTGGAATGTGCTTGGAAAGTGAAGAAAACATGAGTACTGTAGACGAAGATTTTGAGATCATTGTGAATGAACGGACTCGCACGAAGGCTTTGCAGGCTATCGTTGATGTAGTGTTTAATGAGGCAAATTATAGTCTAGCAAGTTCAAACATTTGCAACAGCTGTACGGATAAACTGATCCAGTCTTACATTTTTATAGAAAATGCAAAGGAAACATCTGAGATCTTACACAACTATGTCAATGACTTGTTTAGTAAATCTGATGATATTTTCAATCACTTGCCAGAATCAAGTATCGAAGGTACAAATGTTGTTATTGTTTTAGAAAATAATATCCATGATTCCCCTCAACAAACACAAGTAAAAAATATGTCTAATTTAAAAGCGGAAGAGAAAAATGAAATTTTTGAATTGAAAAAAGAATTTTCATCAAGAAGAAAGAAATTTAAATGCGTGAAATGTCTGTTAATGTTGCCAACACACAGAGCGTTGAAGATACACAGAATGAAATGCAAGAAGCAGATATTCCAATGTCGACTATGTCTTAAAACATTTAGAAATAAACAACATTTCAAAGCCCATCATGAATTGCATTTAAAAGTAAAGTGCAAGTTCTGCCAAGAAATACTTCTCAAAACAGAGTTACTGGATCATCTGAAAACTAACCATGGAGATACTTTAATCAAATGTACAAAATGTGATTTGTTTTATTCTTTAAAAACTTATGAAAGTCACTCTAAGGTCTGTCAACAAATAAAAGAAGGGAATCCTCAATGCTTGATGTGCCTTAAGACTTTTACTGAAAAAGCATTCAAGTCTCACAACTGCAAGTACAGTTGCCCGGAGTGTGCTGAAGTCCCTTGTGTTCACTATAGGTATTTGAAGTCATATCGAGAACAGATTTTAAACAACGCAGACAAAACCAAATGTGTTGACTGTGACTATGTTTGTAAAAGAAAAGAAGTATTACTAGGACACGTGAATCGGGACCATTTAAACAATCATCCATACACTTGTGATAAATGCGGGAAGCAGTTTTATTCCAAAGTTGTTTTAAAAGCTCATATTATTAGGTTCCATGAAAACAGTTTTGTGTGCCAGTTCTGTGATTCAGAATTCAGCAATATTAATAATTATGAAAGTCATGTACAATCCTGTGAGGACATTAGAAGGGAGTTTGTGTGTGAAAATTGTCCGGCCTCTTTCGATTCTTCTGACAGTTTGACGAACCATGTCAAACGTAGACATAGCTCTGATATCTTCCCATGCGGCCTTTGCAATAAAAAGTTCCTGAAAGAGTCTAAAAGGAAAGAACACATGGTTAAAGTTCATAGCAGTCTCCAAATGAAAAATAAGGACAAAAATGTGGAATGCATTGTGTGCCAAGAAAAGTTTAACAACAAAGTAGATTTGGTGCAGCATATGAAATCTCACAGTCCTAACATTACATATCCATGTAGGATCTGCAATACAGAGTATCAGACTTTGAGACAATATCGGGCACATAATCGCAAGCATAACGGGCCATTTGCCACATGCCATGTTTGTGGTATAGAAATGAGAGAGATTCTCCTAAAAAAACATCTGACTACCCACTCAGATTCTGTTGAAACATGCGAAACCTGTGGCAGATCTTTTCAAAACATCACTTTGTTAAAATACCACCAGAAAGTTCATTTAGAGAGTGTGCCATGTCCGAAATGTAATAAAATGATCAACCCAGCCAGGCTACGCAGGCACTGGAGAGGACATCTTATGGAAGAAAATCCACAGAAAGGATTGAAAAAACAACAGCCGAACTTGAAATGTGAACTGTGTGAATATAAAACATGGAACAACACACTTCTAGAATGTCATATGAACCGTCACCACCTAAAAATCAAGCCGTATGTCTGCCACATATGCAGCAAAGACTTTATAGGGAAACACTTACTGAAAAAGCATATAGAAACGCATGACATGAAAAGCGTTATCTGCATGGTGTGCCTGAAGAGTTTCGCCAACTCGACTTGCTTGAAAATGCATCTGCGATTACACACTGGGGAGAAACCTTTTACTTGTGAAATATGTGGCGATAGATTTCGGTCATCGAGCATAATGAATGTTCACAAGTTGAAAAAGCATTCGGATAAGAGTAATGTTTGTCCGTTATGTCCAAACAAGTTTCATACCATAAGAGATTTGAGGAGACATTTGATAAAGGTGCATTGGAAGCAGAAAAATAAGAGGTTTGATCCTCGAGAGCTGAAAGGTTTGGATGAAAAACATTATCATTTGTTTCATGATGGGAGGAGGGTTAAAGTCGCTGATGAAGATGTTGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MVSFKLKLKNILHSSKFCGMCLESEENMSTVDEDFEIIVNERTRTKALQAIVDVVFNEANYSLASSNICNSCTDKLIQSYIFIENAKETSEILHNYVNDLFSKSDDIFNHLPESSIEGTNVVIVLENNIHDSPQQTQVKNMSNLKAEEKNEIFELKKEFSSRRKKFKCVKCLLMLPTHRALKIHRMKCKKQIFQCRLCLKTFRNKQHFKAHHELHLKVKCKFCQEILLKTELLDHLKTNHGDTLIKCTKCDLFYSLKTYESHSKVCQQIKEGNPQCLMCLKTFTEKAFKSHNCKYSCPECAEVPCVHYRYLKSYREQILNNADKTKCVDCDYVCKRKEVLLGHVNRDHLNNHPYTCDKCGKQFYSKVVLKAHIIRFHENSFVCQFCDSEFSNINNYESHVQSCEDIRREFVCENCPASFDSSDSLTNHVKRRHSSDIFPCGLCNKKFLKESKRKEHMVKVHSSLQMKNKDKNVECIVCQEKFNNKVDLVQHMKSHSPNITYPCRICNTEYQTLRQYRAHNRKHNGPFATCHVCGIEMREILLKKHLTTHSDSVETCETCGRSFQNITLLKYHQKVHLESVPCPKCNKMINPARLRRHWRGHLMEENPQKGLKKQQPNLKCELCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVICMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNVCPLCPNKFHTIRDLRRHLIKVHWKQKNKRFDPRELKGLDEKHYHLFHDGRRVKVADEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- iTF_00952985;
- 80% Identity
- -