Lnic034767.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luperina nickerlii
Gene Symbol
-
Assembly
GCA_963855955.1
Location
OY979688.1:1595364-1603801[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0046 0.52 12.1 5.2 2 23 315 336 314 336 0.95
2 16 0.41 45 6.0 1.7 2 23 340 361 339 361 0.97
3 16 0.0037 0.41 12.4 2.4 2 23 447 469 446 469 0.96
4 16 0.00019 0.021 16.5 2.1 1 23 475 498 475 498 0.97
5 16 0.021 2.4 10.0 0.1 1 20 502 521 502 523 0.93
6 16 4.5e-05 0.005 18.4 0.2 1 23 531 554 531 554 0.97
7 16 1.2 1.3e+02 4.5 1.0 1 23 559 582 559 582 0.85
8 16 0.00012 0.013 17.1 0.1 2 23 595 616 594 616 0.97
9 16 0.01 1.1 11.0 1.6 1 23 622 644 622 644 0.98
10 16 0.28 31 6.5 1.9 2 23 650 670 650 670 0.96
11 16 0.0018 0.2 13.4 1.3 2 23 676 697 676 697 0.97
12 16 0.056 6.2 8.7 0.1 2 23 702 722 701 722 0.95
13 16 3.5e-05 0.0039 18.7 3.1 1 23 769 791 769 791 0.98
14 16 0.0015 0.17 13.6 1.4 2 23 797 818 796 818 0.96
15 16 0.065 7.2 8.5 0.8 1 23 824 847 824 847 0.93
16 16 0.0028 0.31 12.8 0.4 1 23 852 875 852 875 0.96

Sequence Information

Coding Sequence
ATGTCGTCGGATAAGCACTGCTGTGTTCCTGGGTGCAAGGACAGTGGAGacatgcATGCCATTCTTCATCAGTTTCCGAACCCTGAAAAAGATAAAGGAAGATTCAATACCTGGCTGTATACAATTGGGGGTGATATTTTGGGACTTGAAAATGCACACATATTTAAGTATCGTCGAGTGTGTCATTTACACTTTGAAGAAAAATATCTGTGTCGCAATAACAGAATAAGCAATATTGCAGTTCCAACATTAAAACCAGgtCTCAATAAAGTTTCACAACCGCAGTCACTGTTTGTTGAAAGGAAACCATTGCAGGGAGTTGTAAATCAGCCAATTCCCTCAACATCTACAGGTCTTGAAAAGATGGACAGTTTCAAGTCGAAACTCAAAAATGTCCTTCACAGTACGAAATATTGCGGGATATGCTTGGAAAGTGACGATAATATGAGCACCATCAACGAAAATCTGGAGGTCATTGTGAACGAACGGACTCGCACGAAAACTTTGACGGCTATCATTGATGTAGTGTTGAAAGAGACTAATTACAGCCTAGCAAGTTCACTCATATGCAACAGTTGTATAGAAAAACTGATTCAGTCATACATTTTCATAGAAAATGCAAAGAAAACATCTAAGATTTTAGACAACTATGTCAACGATTTGTTTAGCAAATCAGATGATATTTTCAATCATTTGCCAGAGTCATGCATCGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATATCCATGATCTTCCTGAAAACGGGGAAAGAAAAGATGAGTTTAACAAAATTGCTgaagaaaataatgaaatcatTAAGGTGAAAAAAGGATTTGCTCCAAAAAGAAAGAGAATCAAATGTGCAAAATGTCTGGTATTGCTACCCTCGCTCAGAGCTTTGAAGATGCATAGAATGAAATGTAAGAAGCAGATATTACGATGTAGACTGTGTTTtaagacatttaaaaataaacaacatttaaatatacataacaaattgcatttgaaagtgaaatgCAAATTTTGTCCTGAAATACTTCATAAAAAAGAATTACTGGAACATCTTAAAACTAACCATGGAGATTCTTTACTCAAATGTTTAAAATGTGAACTGTTTTACtccttaaaaacttatcaaactCACACTAAAGTCTGCCAACAAATAAATGAAGAAAAACCTCAATGCTTGATGTGCCTTAAGACCTACACTGAAAAAGAATTTAAGTCCCATACTTGCAGGTACAGCTGCCCAGAATGTACCGAAATACCTTGCAGGCATTATAAATATTTGAAGTCTTATCGGGAACAAATTTTAAACAATGCAGACAAGACCAAATGTGTTGACTGTGACTATGTGTGTACAAGGAGAGAGCATCTACTCGGACATGTGAATAAGGTCCATTTAAACAATCATCCATATACCTGTGATAAATGCGGACAACACTTTTATTCTAAAGTAGTTTTAAAAGCTCATATTCTCAGGTTCCATGAGAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATTTAGTAATATTAACAATTACGAAAGTCATGTAATATCATGTGAGGATATAAAAAAGAAGTTTGTTTGTGATGATTGTCCAGCCTCTTTCGATTCGTCTGATGGTTTGACGAACCATAGACAACGTAGACATAGCATGGATATTTTTCCATGTGGGCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGGAAAGAGCATATGGTTAAAGTACATAGCAGTCTCAGAATTAAGAAAAGTGATAAAAATATAGAATGTGTTGTGTGTCAAGAAAAGTTTGATAACAAAGGAGACTTGGTACAgcatatgaaatctcatggtccACACACTACATATCCATGCAGGATATGCAATACAGAGTATCAGACTTTGAGGCAGTTTCGAGCACATAATCGCAAACACAATGGACCATTTGCAACATGCCATGTTTGTGGTAAAGAAATGAGAGAAATCCTACTGAAAAAACATCTGACTACTCACTCAGATGCTGTAGAAACATGTGAGACTTGTGGCAGGTCTTTTCAAAACATCACTTTATTAAAGTACCACAAGAAAGTTCATCTAGAAAGTGTCCCATGTCCTAAGTGTaaaaaaatgatcaacccaGCCAGACTACGCAGGCATTGGAGAGGACATCTAATGGAAGAGAATCCTACTCAAAAAGGAATTAGGAAACAACAACCAAACTTGAAATGTGACCTATGTGAGTATAAGACATGGAACAACACCCTTCTAGAATGTCATATGAACCGCCATCATTTGAAAATAAAGCCATACGTCTGCCACATATGCAGCAAAGACTTCATAGGTAAACATTTGCTGAAAAAGCATATTGAAACGCATGATATGAAAAGCGTTGTCTGTATGGTGTGCCTGAAGAGTTTTGCCAATTCAACTTGCTTGAAAATGCATTTGCGGCTACACACAGGTGAGAAGCCTTTCACTTGTGAAATATGTGGGGACCGATTCCGCTCATCCAGCATTATGAATGTACACAAGTTAAAGAAGCATTCTGGTAAGAGTTACATTTGCCCGTTGTgttcaaataagttttatacgGTAAGGGATTTGCGAAGACATGTGATCAAAGTTCATTGGAAGCACAAAAATAAGAGGTTCGACCCTCGAGAGTTGAAAGGGCTGGATAAAGAACATTATCATTTGTTTCATGACGGTAGAAGAGTTAAAGTTGCTGATGAAGATGTTGATTTTTATATGCCCTGTTGA
Protein Sequence
MSSDKHCCVPGCKDSGDMHAILHQFPNPEKDKGRFNTWLYTIGGDILGLENAHIFKYRRVCHLHFEEKYLCRNNRISNIAVPTLKPGLNKVSQPQSLFVERKPLQGVVNQPIPSTSTGLEKMDSFKSKLKNVLHSTKYCGICLESDDNMSTINENLEVIVNERTRTKTLTAIIDVVLKETNYSLASSLICNSCIEKLIQSYIFIENAKKTSKILDNYVNDLFSKSDDIFNHLPESCIESTNVVIVLENNIHDLPENGERKDEFNKIAEENNEIIKVKKGFAPKRKRIKCAKCLVLLPSLRALKMHRMKCKKQILRCRLCFKTFKNKQHLNIHNKLHLKVKCKFCPEILHKKELLEHLKTNHGDSLLKCLKCELFYSLKTYQTHTKVCQQINEEKPQCLMCLKTYTEKEFKSHTCRYSCPECTEIPCRHYKYLKSYREQILNNADKTKCVDCDYVCTRREHLLGHVNKVHLNNHPYTCDKCGQHFYSKVVLKAHILRFHENCFVCQYCDSEFSNINNYESHVISCEDIKKKFVCDDCPASFDSSDGLTNHRQRRHSMDIFPCGLCNKKFLKDSKRKEHMVKVHSSLRIKKSDKNIECVVCQEKFDNKGDLVQHMKSHGPHTTYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKEMREILLKKHLTTHSDAVETCETCGRSFQNITLLKYHKKVHLESVPCPKCKKMINPARLRRHWRGHLMEENPTQKGIRKQQPNLKCDLCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYICPLCSNKFYTVRDLRRHVIKVHWKHKNKRFDPRELKGLDKEHYHLFHDGRRVKVADEDVDFYMPC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01119684;
90% Identity
iTF_00122735;
80% Identity
-