Ckad008251.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381698.1:9107606-9110510[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.037 2.2 9.0 1.2 1 21 168 188 168 189 0.95 2 18 0.02 1.1 9.8 2.9 2 23 196 217 195 217 0.96 3 18 0.73 42 4.9 3.1 2 23 221 242 220 242 0.96 4 18 7.8 4.5e+02 1.7 0.3 2 19 248 264 247 267 0.78 5 18 0.016 0.9 10.2 0.7 2 23 328 350 327 350 0.95 6 18 0.00065 0.037 14.5 1.5 1 23 356 379 356 379 0.97 7 18 0.24 14 6.4 0.2 1 21 383 403 383 404 0.93 8 18 8.7e-05 0.005 17.3 0.2 1 23 412 435 412 435 0.97 9 18 0.64 37 5.1 0.8 1 23 440 463 440 463 0.87 10 18 0.0005 0.029 14.9 0.2 2 23 475 496 474 496 0.96 11 18 0.0072 0.41 11.2 1.6 1 23 502 524 502 524 0.98 12 18 0.18 10 6.8 2.4 2 23 530 550 530 550 0.97 13 18 0.00028 0.016 15.7 1.0 2 23 556 577 556 577 0.97 14 18 0.039 2.3 8.9 0.1 2 23 582 602 581 602 0.95 15 18 2.5e-05 0.0014 19.0 3.1 1 23 649 671 649 671 0.98 16 18 0.0011 0.061 13.9 1.4 2 23 677 698 676 698 0.96 17 18 0.046 2.6 8.7 0.8 1 23 704 727 704 727 0.93 18 18 0.037 2.1 9.0 1.1 3 23 734 755 733 755 0.95
Sequence Information
- Coding Sequence
- ATGAATAATTTGAAGTTGAAGCTTAAAAATGTCCTTCTCAGCACGAAGTATTGTGGGATATGCTTGGAAAGTGATGATAATATGAGCACTGTTGATGAACATGTCGAGCTCATTGTAAACGAACAGGCCCTCTCGAAATCTTTAAATACTGTTATTGAATTGGTGTTTAAAGAGGCTAACATACAACTAGCAAGTTCTCTAATATGTAACGGCTGTACAGAAAAACTTATGCAGTCATATATTTTCATAGAAAATGCTAAAGAAACATCCAAGATTTTAGACAGCTATGTTAATGATTTGTTTAACAAATCAAATGATATTTTCAATCATTTACCTGACTCTAGCATTGAAAGTAGCAATGTTGTAATTGTATTAGAAAATAATATGCACGAGTTACCTGAAAACAGAGAAGTAAAAGATGAGTTTATCAAAATGGAGGAAGAAAAGAATGAAATCTTGAAAGTTAAAAAAGAATTCAGAATAAAAAGAAAGTTCTCCAAATTCAAATGTACAAAATGTCTGAAAATGCTTCCCTCGCACAGAGCTTTGAAAGTACATAGAATGAAATGTGAAAAGAAGATTTTACGATGCAGACTCTGTTTTAAGATATTAAAAAATAAACAGCATTTAAATGTACATTACGAGATGCATTCAAAAGTAAAATGCAAGGTTTGTCACGAGATAATTCATAAAAAAGAATTACTGGACCATCTTAAGACAAATCACGGAGATTCATTACTCAAGTGTCCGAATTGTGAATTATTTTATTCCTTGAATACATTTGAAACACATTCTAAAATCTGCCAACAAACGAAAGAAGATAATCCTCAATGCTTGATGTGTTTAAAAACTTTTACTGAGAAAGAATTTAAGTTCCATATTTGCAGATACAAATGCCCTGAATGTACCGTAATACCTTGTGTGCATTATAAGTATTTGAAGTCTTATTGGGAACAGATTTCAAACCATGCAGCCAAGACCAAGTGTGTTGACTGCGACTATGTTTGTACAAGAAAAGAAGTCTTACTCGGACATGTGAATCGGGACCATTTGAACAATAATCCATATACTTGTGATAAATGCGGAAAACAATTTTATTCTAAAATCATTTTAAAATCTCATATTCTTAGGTTCCATGAAAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATACAGTAATATTATCAGTTACGAAAGTCATGTTAAATCCTGTGAGGATGTCAAAAGAAAGTATGCTTGTGACGATTGTCCGGCTTCCTTTGATTTTTCTGATAGTTTGACGAACCATGTGAAACGCAGGCATAGCACAGATATGTTCCCATGTGGTCTTTGTAATAAAAAGTTTCTCAAAGGTTCAAAAAGGAAAGAGCATATGGCCAAAGTGCATAGCGATCTCCATAAGAATAAATCTTTGAATGTAGAATGTGTCGTTTGTCAAGAAAAGTTTGAAAGTAAAGGAGAATTGGTGCAGCATATGAAATTTCACGGTCCTAATGCTACATATCCATGCAGAATATGCAATACAGAGTATCAGACTTTAAGACAGTTTAGGGCACATAATCGCAAACACAACGGACCATTTGCCACGTGCCATGTTTGCGGCAAACAAATGCGAGAAGTCCTTTTAAAGAAACATCTGACTACCCACTCAGAATCTGTAGAAACCTGTGAAACGTGCGGGCGATCATTTCAAAATATCACTCTATTAAAATACCACCAGAAAGTTCACTTAGAAAGTGTCCCATGTCCTAAATGTAAGAAGATGATCAATCCAGCAAGACTACGGAGGCACTGGAGAGGGCATCTAATGGTAGAGAATCCCGCTCAAAAAGGTATTAAAAAACAACAGCCGAACTTGAAGTGCGAACTATGCGAGTACAAGACATGGAACAACACGCTCTTAGAATGTCATATGAACCGCCACCATTTAAAAATAAAGCCATACGTTTGCCATATTTGCAGTAAAGACTTTATAGGCAAACATTTGCTGAAAAAGCATATTGAGACGCATGGCATGAAAACCGTTGTCTGCATGGTATGTCTTAAAAGCTTCGCAAACTCTACGTGCTTGAAAATGCATCTCCGTTTACACACAGGCGAGAAGCCATTCACTTGTGAAATATGTGGCGATAGATTCCGTTCCTCAAGTATTATGAACGTACACAAGTTAAAAAAACATTCCGACAAGAATAATATTTGTCCGTTATGTTCGAATAAGTTTCATACTGTTAGGGATTTGAGAAGGCATGTGATTAAAGTACATTGGAAACAGAAGAATAAGAGGTTTGACCCTCGAGAGCTGAAAGGTTTAGATAAGGAGCATTATCATTTGTTTCATGATGGTCGGAGAGTTAAAGTTGCTGAAGAAGATGTCGATTTTTACATGCCTTGTTGA
- Protein Sequence
- MNNLKLKLKNVLLSTKYCGICLESDDNMSTVDEHVELIVNEQALSKSLNTVIELVFKEANIQLASSLICNGCTEKLMQSYIFIENAKETSKILDSYVNDLFNKSNDIFNHLPDSSIESSNVVIVLENNMHELPENREVKDEFIKMEEEKNEILKVKKEFRIKRKFSKFKCTKCLKMLPSHRALKVHRMKCEKKILRCRLCFKILKNKQHLNVHYEMHSKVKCKVCHEIIHKKELLDHLKTNHGDSLLKCPNCELFYSLNTFETHSKICQQTKEDNPQCLMCLKTFTEKEFKFHICRYKCPECTVIPCVHYKYLKSYWEQISNHAAKTKCVDCDYVCTRKEVLLGHVNRDHLNNNPYTCDKCGKQFYSKIILKSHILRFHENCFVCQYCDSEYSNIISYESHVKSCEDVKRKYACDDCPASFDFSDSLTNHVKRRHSTDMFPCGLCNKKFLKGSKRKEHMAKVHSDLHKNKSLNVECVVCQEKFESKGELVQHMKFHGPNATYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREVLLKKHLTTHSESVETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLMVENPAQKGIKKQQPNLKCELCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHGMKTVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKNNICPLCSNKFHTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVAEEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119684;
- 90% Identity
- -
- 80% Identity
- -